Pairwise Alignments

Query, 458 a.a., MATE family efflux transporter from Vibrio cholerae E7946 ATCC 55056

Subject, 456 a.a., MATE efflux family protein (RefSeq) from Shewanella loihica PV-4

 Score = 62.4 bits (150), Expect = 3e-14
 Identities = 76/324 (23%), Positives = 135/324 (41%), Gaps = 21/324 (6%)

Query: 23  ALPITLQNIMFSSRGLVDVLMLGQ-LGEAEIAAVGVAARATFVTTIMLVGVTTGGALLTA 81
           A+P  L  ++      +D + +G  LGE  +A + +A     +   +   +  G A L +
Sbjct: 29  AIPTILSMVVTGVYVAIDGMFVGHYLGEVGLAGMMLAYPVGAILYAVGALIGMGAASLVS 88

Query: 82  QYWGAGDRKGVRESTALTWLVSNFFAFFTVLLFLFFPQQIMSLTTDSEQVNALGSQYLII 141
              G  D    R      + +         LL   + Q I+       +V     QYL  
Sbjct: 89  INLGLKDVARARHLLGNAFTLCLLAGTGLALLGTRWSQTILIWLGAEGEVLTSAEQYL-- 146

Query: 142 TSFTMFAVACVSSMAVGLRAM----HKPGVSTFFSGIGIVSNVVLNWILIFGKFGFPAMG 197
             F  FA+     +A+   A+     +PG  T    +    NV+L+W+LI     FP  G
Sbjct: 147 --FWYFALGVFPVLAIAFTALLRNDGRPGFVTLVLILSGCLNVLLDWLLIVV---FP-YG 200

Query: 198 IQGAAIATVLSGAIEIACLYSYLYGKKHLMAFGWQDIKAVIDWPKISRFLRLSLPTTFNF 257
           + GAAIAT++  A        + + K+  +   WQ ++  +D    S  LR+ +P +F  
Sbjct: 201 LAGAAIATMICQAFTALACLQHFFTKRTRLGINWQQMRLNLD--HCSNILRVGVP-SFLM 257

Query: 258 LIWAAGLFTYH--AIMGQTGVQGLAALSVMTPVESISLSLLIGMSTAAAVLVGNQLGAKN 315
            ++ + + T H  A +   G   +AA  V++  E++   +  G++     L     GAK 
Sbjct: 258 NLYLSIVLTLHNMAFLWVGGPIHVAAYGVVSYAEALFYLIFEGIAFGTQPLFSFNTGAKR 317

Query: 316 YEAVYYQ---AIGVTACSVLVGIV 336
           ++ V+      I +T  + L G+V
Sbjct: 318 FDRVFETLRLVIIMTLVTALAGVV 341