Pairwise Alignments

Query, 458 a.a., MATE family efflux transporter from Vibrio cholerae E7946 ATCC 55056

Subject, 455 a.a., MATE efflux family protein (RefSeq) from Shewanella loihica PV-4

 Score = 72.8 bits (177), Expect = 2e-17
 Identities = 74/339 (21%), Positives = 148/339 (43%), Gaps = 6/339 (1%)

Query: 17  RRLIAIALPITLQNIMFSSRGLVDVLMLGQLGEAEIAAVGVAARATFVTTIMLVGVTTGG 76
           R L+ ++LP  +  +      LVD   + QLG   +AA+      T + + + +G+  G 
Sbjct: 14  RVLLNMSLPNLIGILTILGFSLVDTFFISQLGTEALAAISFTFPVTLIVSSIAIGIGAGV 73

Query: 77  ALLTAQYWGAGDRKGVRESTALTWLVSNFFAFFTVLLFLFFPQQIMSLTTDSEQVNALGS 136
           +    +  G+G+    +       L++ +      LL   F   + +L   ++    L  
Sbjct: 74  STNLGRLIGSGNSPKAKVFLHDALLITFWLIAALSLLGSLFIGPLFTLLGANDDSLPLIR 133

Query: 137 QYLIITSFTMFAVACVSSMAVGLRAMHKPGVSTFFSGIGIVSNVVLNWILIFGKFGFPAM 196
            Y+ +       +  +     GLRA            +  V N+VL+ +LIFG   FP +
Sbjct: 134 DYMFLWYLGAPLLVLLMVGNQGLRATGDTKSPAKIMALAAVINLVLDPLLIFGLGPFPRL 193

Query: 197 GIQGAAIATVLSGAIEIACLYSYLYGKKHLMAFGWQDIKAV-IDWPKISRFLRLSLPTTF 255
            IQGAAIAT++S  + ++     L  K++L+ F   +++ +  +W +++    ++ P   
Sbjct: 194 EIQGAAIATLISWVVALSLSGYLLIIKRNLVDFAEFNLERIHCNWRQLA---HIAQPAAL 250

Query: 256 NFLIWAAGLFTYHAIMGQTGVQGLAALSVMTPVESISLSLLIGMSTAAAVLVGNQLGAKN 315
             L+         A++ +     +AA    T +ES+ L  ++ +S++    +   LGA  
Sbjct: 251 MNLLNPVANAIIMAMLARIDHSAVAAFGAGTRLESVLLIAVMALSSSLVPFIAQNLGAGQ 310

Query: 316 YEAVYYQAIGVTACSVLV-GIVVAIGLYLVQIPVLGAFT 353
            E     A+ ++   VLV   ++ + L L+  P+   F+
Sbjct: 311 TERA-RDALMLSLRFVLVFQTLIYLPLALMATPIAQLFS 348



 Score = 50.4 bits (119), Expect = 1e-10
 Identities = 52/206 (25%), Positives = 87/206 (42%), Gaps = 16/206 (7%)

Query: 16  FRRLIAIALPITLQNIMFSSRGLVDVLMLGQLGEAEIAAVGVAARATFVTTIMLVGVTTG 75
           +R+L  IA P  L N++      + + ML ++  + +AA G   R   V  I ++ +++ 
Sbjct: 238 WRQLAHIAQPAALMNLLNPVANAIIMAMLARIDHSAVAAFGAGTRLESVLLIAVMALSSS 297

Query: 76  GALLTAQYWGAGDRKGVRESTALTWLVSNFFAFFTVLLFL---FFPQQIMSLTTDSEQVN 132
                AQ  GAG  +  R++  L+     F   F  L++L        I  L +   QV 
Sbjct: 298 LVPFIAQNLGAGQTERARDALMLSL---RFVLVFQTLIYLPLALMATPIAQLFSKDPQVI 354

Query: 133 ALGSQYLIITSFTMFAVACVSSMAVGLRAMHKPGVSTFFSGIGIVSNVVLNWILI--FGK 190
              S Y+I        +  V   A  L A H+P  S       +V NV   ++L+     
Sbjct: 355 EWLSFYIIALPAAYGPLGMVILTATSLNAYHRPMSS-------LVLNVCRLFLLLLPLAA 407

Query: 191 FGFPAMGIQGAAIATVLSGAI-EIAC 215
            G    G++G  +A  ++ A+  IAC
Sbjct: 408 LGSYLGGVKGLLLALPITNAVMGIAC 433