Pairwise Alignments

Query, 458 a.a., MATE family efflux transporter from Vibrio cholerae E7946 ATCC 55056

Subject, 459 a.a., MATE efflux family protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 81.6 bits (200), Expect = 5e-20
 Identities = 105/463 (22%), Positives = 184/463 (39%), Gaps = 40/463 (8%)

Query: 17  RRLIAIALPITLQNIMFSSRGLVDVLMLGQLGEAEIAAVGVAARATFVTTIMLVGVTTGG 76
           +RLI +ALP+ +  +  +  G +D +M G++   ++AAV V         + + G+    
Sbjct: 9   KRLIQLALPVLIAQVTQTMMGFIDTVMAGRVSAVDMAAVAVGTSLWLPAILFVQGLLMAF 68

Query: 77  ALLTAQYWGAGDRKGVRESTALTWLVSNFFAFFTVLLFLFFPQQIMSLTTDSEQVNALGS 136
             L A + GA ++K + +  A             V++FL     ++S      Q+  L  
Sbjct: 69  TPLFAHHNGANNQKAI-QPLAFQGAYLALIGGLGVMVFLASAPLVLSHMNLEPQLYNLTI 127

Query: 137 QYLI-----ITSFTMFAV--ACVSSMAVGLRAMHKPGVSTFFSGIGIVSNVVLNWILIFG 189
            Y+        +F ++ V   C   ++  L  M           +G+  N+  N+I I+G
Sbjct: 128 GYIDGILWGAPAFVLYQVLRGCSEGISYTLPTM-------VIGFVGLAVNIPANYIFIYG 180

Query: 190 KFGFPAMGIQGAAIATVLSGAIEIACLYSYLYGKKHLMAFGWQDIKAVIDWPKISRFLRL 249
            FG PAMG  G  IAT L     +  +  Y+   K   A          D+  + +  +L
Sbjct: 181 HFGIPAMGGAGCGIATALVFWAMLIAMAIYMQFHKKFAALAPFSQFHRPDFATMKKMTKL 240

Query: 250 SLPTTFNFLIWAAGLFTYHA-IMGQTGVQGLAALSVMTPVESISLSLLIGMSTAAAVLVG 308
            LP     L +   LF   A ++   G   +A+  +     +I   L + +  A ++ +G
Sbjct: 241 GLPIAM-ALFFEVSLFAIIALLLAPLGATVVASHQIALNFSAIVFMLPLSIGIAVSIRIG 299

Query: 309 NQLGAKNYEAVYYQAIGVTACSVLVGIVVAIGLYL--VQIPVLGAFTAL-----TPETRE 361
             LG    +        ++A    VG+++A+ L L    + VL  F         PE   
Sbjct: 300 YYLGRDRAD--------ISAVVAKVGLLLALSLALSTAILTVLFRFQIAELYNSDPEVVV 351

Query: 362 LSEKFMLILCLGIVLRSFPMTAIVGVLRAGGDVKFCLGQDIVAQWCIGIPLAAFAALVLK 421
           L+   ML+  L  +  S  + A  G LR   D +      + + W IG+ L    A    
Sbjct: 352 LAGSLMLMAALYQLSDSVQVVA-AGALRGYKDTRSAFYITLFSYWGIGMSLGYTLAYTDF 410

Query: 422 VEPE------WIYLLF-LTEEVVKWFGSLHRMKSKKWMKNLIE 457
           + P       W  L+  LT   + +F  L  ++  +   +LIE
Sbjct: 411 IVPAMGAHGFWTGLIAGLTSAALLFFIRLRYIQKHRVHLSLIE 453