Pairwise Alignments

Query, 458 a.a., MATE family efflux transporter from Vibrio cholerae E7946 ATCC 55056

Subject, 501 a.a., MATE efflux family protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 76.6 bits (187), Expect = 2e-18
 Identities = 80/317 (25%), Positives = 139/317 (43%), Gaps = 11/317 (3%)

Query: 38  LVDVLMLGQLGEAEIAA-VGVAARATFVTTIMLVGVTTGGALLTAQYWGAGDRKGVREST 96
           L+D+  L  LGE E+AA VG A   +F TT++ +G++     L ++  GA D +  +   
Sbjct: 34  LLDIFFLSLLGEHELAAAVGYAGSISFFTTLIGIGLSIALGALVSRSIGAKDVELAKRLL 93

Query: 97  ALTWLVSNFFAFFTVLLFLFFPQQIMSLTTDSEQVNALGSQYLIITSFTMFAVACVSSMA 156
             + +V+   + F  ++   F  ++++L   S     L   YL I   ++  +    ++ 
Sbjct: 94  LNSAVVTTLISVFVSIVVTTFIPELVTLVGASGHTAELAESYLYILVPSLPFICLAMALG 153

Query: 157 VGLRAMHKPGVSTFFSGIGIVSNVVLNWILIFGKFGFPAMGIQGAAIATVLSGAIEIACL 216
             LR++    +S   +  G   N VL+ I IF      AMGI+GAA+A+VL+        
Sbjct: 154 GALRSVGDAKLSMMSTLAGGGVNAVLDPIFIF----LFAMGIEGAALASVLARITVFVIA 209

Query: 217 YSYLYGKKHLMA-FGWQDIKAVIDWPKISRFLRLSLPTTFNFLIWAAGLFTYHAIMGQTG 275
              +  K  L+  F   D KA  D   I      ++ T     I  A +    A  G   
Sbjct: 210 GRGVMVKHQLLGKFNRSDFKA--DLKPIFAIAGPAILTNIATPIGNAFVTRAIADFGDAY 267

Query: 276 VQGLAALSVMTPVESISLSLLIGMSTAAAVLVGNQLGAKNYEAVYYQAIGVTACSVLVGI 335
           V G A L  + PV   +  ++  +S A   +VG   GA  ++ V            L  +
Sbjct: 268 VAGWAVLGRLVPV---TFGMIFALSGAIGPIVGQNFGAGRFDRVRESLTKAIQFCTLYVV 324

Query: 336 VVAIGLYLVQIPVLGAF 352
           V+++ L+L++  ++  F
Sbjct: 325 VMSLLLFLLKSQIVSLF 341



 Score = 45.8 bits (107), Expect = 3e-09
 Identities = 40/152 (26%), Positives = 63/152 (41%), Gaps = 25/152 (16%)

Query: 270 IMGQTGVQGLAALSVMTPVESISLSLL-----------------------IGMSTAAAVL 306
           +M  T   G++AL V+  ++   LSLL                       IG+S A   L
Sbjct: 17  VMSSTAAVGISALFVVDLLDIFFLSLLGEHELAAAVGYAGSISFFTTLIGIGLSIALGAL 76

Query: 307 VGNQLGAKNYEAVYYQAIGVTACSVLVGIVVAIGLYLVQIPVLGAFTALTPETRELSEKF 366
           V   +GAK+ E      +     + L+ + V+I +    IP L      +  T EL+E +
Sbjct: 77  VSRSIGAKDVELAKRLLLNSAVVTTLISVFVSI-VVTTFIPELVTLVGASGHTAELAESY 135

Query: 367 MLILCLGIVLRSFPMTAIVGVLRAGGDVKFCL 398
           + IL   +      M A+ G LR+ GD K  +
Sbjct: 136 LYILVPSLPFICLAM-ALGGALRSVGDAKLSM 166



 Score = 37.0 bits (84), Expect = 1e-06
 Identities = 48/212 (22%), Positives = 80/212 (37%), Gaps = 10/212 (4%)

Query: 12  RGDF---FRRLIAIALPITLQNIMFSSRGLVDVLMLGQLGEAEIAAVGVAARATFVTTIM 68
           R DF    + + AIA P  L NI            +   G+A +A   V  R   VT  M
Sbjct: 225 RSDFKADLKPIFAIAGPAILTNIATPIGNAFVTRAIADFGDAYVAGWAVLGRLVPVTFGM 284

Query: 69  LVGVTTGGALLTAQYWGAGDRKGVRESTALTWLVSNFFAFFTVLLFLFFPQQIMSL---T 125
           +  ++     +  Q +GAG    VRES          +     LL      QI+SL    
Sbjct: 285 IFALSGAIGPIVGQNFGAGRFDRVRESLTKAIQFCTLYVVVMSLLLFLLKSQIVSLFDMK 344

Query: 126 TDSEQVNALGSQYLIITSFTMFAVACVSSMAVGLRAMHKPGVSTFFSGIGIVSNVVLNWI 185
            DS  +      Y+ +  F    +  V++       + K   ST F+ +G  +   + ++
Sbjct: 345 GDSAALIEFFCSYIAV-FFIFSGILFVAN--ASFNNLGKAKYSTLFN-VGKATLGTVPFV 400

Query: 186 LIFGKFGFPAMGIQGAAIATVLSGAIEIACLY 217
            +  + G     + G  I ++L G + +   Y
Sbjct: 401 YVGAQLGGVYGVLIGQVIGSILFGVVGVWVAY 432