Pairwise Alignments

Query, 458 a.a., MATE family efflux transporter from Vibrio cholerae E7946 ATCC 55056

Subject, 452 a.a., MATE efflux family protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 68.9 bits (167), Expect = 3e-16
 Identities = 87/370 (23%), Positives = 158/370 (42%), Gaps = 18/370 (4%)

Query: 17  RRLIAIALPITLQNIMFSSRGLVDVLMLGQLGEAEIAAVGVAARATFVTTIMLVGVTTGG 76
           R L+ ++LP  +  +      L D   + QLG   +AA+      T + + + +GV  G 
Sbjct: 14  RVLLNMSLPNLIGIMTILGFSLADTFFISQLGTEALAAISFTFPVTLIISSIAIGVGAGV 73

Query: 77  ALLTAQYWGAGDRKGVRESTALTWLVSNFFAFFTVLLFLFFPQQIMSLTTDSEQVNALGS 136
           +    +  G+G+    +       L++         L   F + + SL   +E    L  
Sbjct: 74  STNLGRLIGSGNAPQAKVFLHDALLLTFILIASLSALGSIFIEPLFSLLGANETSLPLIH 133

Query: 137 QYLIITSFTMFAVACVSSMAVGLRAMHKPGVSTFFSGIGIVSNVVLNWILIFGKFGFPAM 196
            Y++        +  +     GLR+            +  + N++L+ +LIFG   FP +
Sbjct: 134 DYMMYWYVGAPLLVLLMVGNQGLRSTGDTRSPAMIMTLAAIINLILDPLLIFGIGPFPRL 193

Query: 197 GIQGAAIATVLSGAIEIACLYSYLYGKKHLM----AFGWQDIKAVIDWPKISRFLRLSLP 252
            IQGAAIAT+ S  + ++ L  YL   KH M    AF    ++A  +W K++    ++ P
Sbjct: 194 EIQGAAIATLFSWLVALS-LSGYLLIIKHRMLERAAFDIDRMRA--NWSKLA---HIAQP 247

Query: 253 TTFNFLIWAAGLFTYHAIMGQTGVQGLAALSVMTPVESISLSLLIGMSTAAAVLVGNQLG 312
                LI         A++       +AA    T +ES+ L +++ +S++    +   LG
Sbjct: 248 AALMNLINPLANAVIMAMLAHIDHSAVAAFGAGTRLESVLLIVVMALSSSLMPFIAQNLG 307

Query: 313 AKNYEAVYYQAIGVTACSVLV-GIVVAIGLYLVQIPVLGAFTALTPETRELSEKFMLIL- 370
           A   +    QA+ ++   +LV   ++ I L     P+   F+   P+  E    ++L+L 
Sbjct: 308 AGQPQRA-KQALLLSLKFILVFQTLLYIPLAFFAQPLASLFST-DPQVLEWLSFYILVLP 365

Query: 371 C----LGIVL 376
           C    LGIV+
Sbjct: 366 CAYGPLGIVI 375



 Score = 55.5 bits (132), Expect = 4e-12
 Identities = 55/214 (25%), Positives = 94/214 (43%), Gaps = 13/214 (6%)

Query: 8   LSHMRGDFFRRLIAIALPITLQNIMFSSRGLVDVLMLGQLGEAEIAAVGVAARATFVTTI 67
           +  MR ++  +L  IA P  L N++      V + ML  +  + +AA G   R   V  I
Sbjct: 231 IDRMRANW-SKLAHIAQPAALMNLINPLANAVIMAMLAHIDHSAVAAFGAGTRLESVLLI 289

Query: 68  MLVGVTTGGALLTAQYWGAGDRKGVRESTALTWLVSNFFAFFTVLLFL---FFPQQIMSL 124
           +++ +++      AQ  GAG  +  +++  L+     F   F  LL++   FF Q + SL
Sbjct: 290 VVMALSSSLMPFIAQNLGAGQPQRAKQALLLSL---KFILVFQTLLYIPLAFFAQPLASL 346

Query: 125 TTDSEQVNALGSQYLIITSFTMFAVACVSSMAVGLRAMHKPGVSTFFSGIGIVSNVVLNW 184
            +   QV    S Y+++       +  V   A  L A H+P  S     I +   V+L  
Sbjct: 347 FSTDPQVLEWLSFYILVLPCAYGPLGIVIIFATALNAYHRPMSSLV---INLCRLVLL-- 401

Query: 185 ILIFGKFGFPAMGIQGAAIATVLSGAI-EIACLY 217
           +L     G    G++G  +A  ++  +  IAC Y
Sbjct: 402 MLPLAALGSYIDGVKGLLLALPITNLLMGIACYY 435