Pairwise Alignments

Query, 458 a.a., MATE family efflux transporter from Vibrio cholerae E7946 ATCC 55056

Subject, 451 a.a., conserved hypothetical protein (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score = 82.8 bits (203), Expect = 2e-20
 Identities = 75/308 (24%), Positives = 131/308 (42%), Gaps = 6/308 (1%)

Query: 13  GDFFRRLIAIALPITLQNIMFSSRGLVDVLMLGQLGEAEIAAVGVAARATFVTTIMLVGV 72
           G   R+L  +A+PI   + +  +  L D+  +G+LG   +AA+G     T+++  + +  
Sbjct: 10  GPINRQLFNLAMPIMATSFIQMAYSLTDMAWVGRLGSEAVAAIGSVGILTWMSGSISLLN 69

Query: 73  TTGGALLTAQYWGAGDRKGVRESTALTWLVSNFFAFFTVLLFLFFPQQIMSLTTDSEQVN 132
             G  +   Q  GA +++  R+  +    ++   +     L   F   I+ +    E + 
Sbjct: 70  KVGSEVSVGQSIGAQNQEDARQFASHNITIALIISICWGGLLFMFASPIIRIYELEEHIT 129

Query: 133 ALGSQYLIITSFTMFAVACVSSMAVGLRAMHKPGVSTFFSGIGIVSNVVLNWILIFGKFG 192
           A   +YL I S  +  +   ++      A  +  +  + SG G++ N++L+ + IFG FG
Sbjct: 130 ANAIEYLRIISTALPFIFLSAAFTGIYNAAGRSKIPFYISGTGLIMNIILDPLFIFG-FG 188

Query: 193 FPAMGIQGAAIATVLSGAIEIACLYSYLYGKKHLMAFGWQDIKAVIDWPKISRFLRLSLP 252
              +G  GAA AT LS A   A     L  +K  +  G+      +      R L+L LP
Sbjct: 189 ---LGTNGAAYATWLSQATVFAIFIYQLRFRKDALLGGFPFFSR-LKKKYTRRILKLGLP 244

Query: 253 -TTFNFLIWAAGLFTYHAIMGQTGVQGLAALSVMTPVESISLSLLIGMSTAAAVLVGNQL 311
             T N L     +F       Q G  GL   +    +E+I+ +   G STA +  +    
Sbjct: 245 VATLNTLFAFVNMFLCRTASEQGGHIGLMTFTTGGQIEAITWNTSQGFSTALSAFIAQNF 304

Query: 312 GAKNYEAV 319
            A   E V
Sbjct: 305 AAGRIERV 312



 Score = 42.4 bits (98), Expect = 3e-08
 Identities = 43/211 (20%), Positives = 87/211 (41%), Gaps = 23/211 (10%)

Query: 9   SHMRGDFFRRLIAIALPITLQNIMFSSRGLVDVLML-------GQLGEAEIAAVGVAARA 61
           S ++  + RR++ + LP+   N +F+    V++ +        G +G       G     
Sbjct: 228 SRLKKKYTRRILKLGLPVATLNTLFA---FVNMFLCRTASEQGGHIGLMTFTTGGQIEAI 284

Query: 62  TFVTTIMLVGVTTGGALLTAQYWGAGDRKGVRESTALTWLVSNFFAFFTVLLFLFFPQQI 121
           T+ T+    G +T  +   AQ + AG  + V ++   T  ++  F  F  LLF+F+  ++
Sbjct: 285 TWNTS---QGFSTALSAFIAQNFAAGRIERVLKAWHTTLWMTGIFGTFCTLLFVFYGNEV 341

Query: 122 MSLTTDSEQVNALGSQYLIITSFT---MFAVACVSSMAVGLRAMHKPGVSTFFSGIGIVS 178
            S+    +     G  +L I  ++   M     +  +  G+     P +      + IV 
Sbjct: 342 FSIFVPEQAAYEAGGVFLRIDGYSQLFMMLEITMQGVFYGIGRTVPPAI------VSIVC 395

Query: 179 NVV-LNWILIFGKFGFPAMGIQGAAIATVLS 208
           N + +   ++F + G    GI  A   T ++
Sbjct: 396 NYMRIPLAILFVRMGMGVEGIWWAVCVTTIA 426



 Score = 32.7 bits (73), Expect = 2e-05
 Identities = 36/164 (21%), Positives = 67/164 (40%), Gaps = 2/164 (1%)

Query: 232 QDIKAVIDWPKISRFLRLSLPTTFNFLIWAAGLFTYHAIMGQTGVQGLAALSVMTPVESI 291
           Q IK +   P   +   L++P      I  A   T  A +G+ G + +AA+  +  +  +
Sbjct: 2   QGIKNLTHGPINRQLFNLAMPIMATSFIQMAYSLTDMAWVGRLGSEAVAAIGSVGILTWM 61

Query: 292 SLSLLIGMSTAAAVLVGNQLGAKNYEAVYYQAIGVTACSVLVGIVVAIGLYLVQIPVLGA 351
           S S+ +     + V VG  +GA+N E     A      ++++ I     L++   P++  
Sbjct: 62  SGSISLLNKVGSEVSVGQSIGAQNQEDARQFASHNITIALIISICWGGLLFMFASPIIRI 121

Query: 352 FTALTPETRELSEKFMLILCLGIVLRSFPMTAIVGVLRAGGDVK 395
           +      T    E ++ I+   +    F   A  G+  A G  K
Sbjct: 122 YELEEHITANAIE-YLRIISTALPF-IFLSAAFTGIYNAAGRSK 163