Pairwise Alignments

Query, 458 a.a., MATE family efflux transporter from Vibrio cholerae E7946 ATCC 55056

Subject, 443 a.a., BexA: efflux pump for ciprofloxacin, lomefloxacin, and paraquat (from data) from Bacteroides thetaiotaomicron VPI-5482

 Score =  100 bits (248), Expect = 1e-25
 Identities = 119/464 (25%), Positives = 191/464 (41%), Gaps = 50/464 (10%)

Query: 16  FRRLIAIALPITLQNIMFSSRGLVDVLMLGQLGEAEIAAVGVAARATFVTTIMLVGVTTG 75
           ++++  IA PI +  IM    G+ D   LG++GE E+ A  +A        +M  G + G
Sbjct: 7   YKQIWTIAYPILISLIMEQLIGMTDTAFLGRVGEIELGASAIAGVYYLAIFMMAFGFSVG 66

Query: 76  GALLTAQYWGAGDRKGVRES--TALTWLVSNFFAFFTVLLFLFFPQQIMSLTTDSEQVNA 133
             +L A+  G G+ K +       + +LV      FT  L + F   I+     S  +  
Sbjct: 67  AQILIARRNGEGNYKEIGPIFYQGIYFLVVVAAILFT--LSIVFSPFILKNIISSPHIYD 124

Query: 134 LGSQYL---IITSFTMFAVACVSSMAVGLRAMHKPGVSTFFSGIGIVSNVVLNWILIFGK 190
               Y+   +   F  F      +  VG     +    T  S + ++SNVV N+ILIFGK
Sbjct: 125 AAESYIHWRVYGFFFSFVGVMFRAFFVGTT---QTKTLTLNSIVMVLSNVVFNYILIFGK 181

Query: 191 FGFPAMGIQGAAIATVLSGAIEIACLYSYL--------YGKKHLMAFGWQDIKAVID--- 239
           FGFP +GI GAAI + L+  + +     Y         Y    L  F  + +K +++   
Sbjct: 182 FGFPQLGIAGAAIGSSLAELVSVIFFIIYTWKRIDCKKYALNILPKFQSRTLKRILNVSV 241

Query: 240 WPKISRFLRLSLPTTFNFLIWAAGLFTYHAIMGQTGVQGLAALSVMTPVESISLSLLIGM 299
           W  I  F  +SL T F F      LF  H      G + LA  +++  V  I   + +  
Sbjct: 242 WTMIQNF--VSLSTWFMFF-----LFVEH-----LGERSLAIANIIRNVSGIPFMIAMAF 289

Query: 300 STAAAVLVGNQLGAKNYEAVYYQAIGVTACSVLVG--IVVAIGLYLVQIP--VLGAFTAL 355
           +     LV N +GA   + V     G     + +G   V+ I ++    P  +L  +T +
Sbjct: 290 AATCGSLVSNLIGAGEKDCVR----GTINQHIRIGYVFVLPILIFFCLFPDLILRIYTDM 345

Query: 356 TPETRELSEKFMLILCLGIVLRSFPMTAIVGVLRAGGDVKFCLGQDIVAQWCIGIPLAAF 415
            P+ R+ S   + +LC   V+   P       +   G+ +  L  ++     I +  A +
Sbjct: 346 -PDLRDASIPSLWVLCAAYVV-LVPANVYFQSVSGTGNTRTALAMELCV-LTIYVAYATY 402

Query: 416 AALVLKVEPEWIYLLFLTEEVVKWFGSLH---RMKSKKWMKNLI 456
             L LK++   I   + TE V   F  L     MK   W K  I
Sbjct: 403 FILYLKMD---IAFAWTTESVYGIFIFLFCYWYMKKGNWQKKQI 443