Pairwise Alignments

Query, 458 a.a., MATE family efflux transporter from Vibrio cholerae E7946 ATCC 55056

Subject, 470 a.a., multidrug transporter MatE from Burkholderia phytofirmans PsJN

 Score = 72.4 bits (176), Expect = 3e-17
 Identities = 86/396 (21%), Positives = 156/396 (39%), Gaps = 12/396 (3%)

Query: 22  IALPITLQNIMFSSRGLVDVLMLGQLGEAEIAAVGVAARATFVTTIMLVGVTTGGALLTA 81
           +A P+ +  +   + G+ D ++LG LG   +AA G+ A   FV   +L GV T  ++  +
Sbjct: 26  LAAPLAIAQLSQMAMGVTDTILLGSLGPDALAAGGLGANLFFVVVTLLQGVLTSVSVSVS 85

Query: 82  QYWGAGDRKGVRESTALTWLVSNFFAFFTVLLFLFFPQQIMSLTTDSEQVNALGSQYLII 141
              GA D   V        ++S   +     L  F    +++    +   + +G    ++
Sbjct: 86  HARGAQDEGRVPHIYWTGLVLSVLLSVPAFFLLSFATPILLAFGEPALLAHNVGEYSAVL 145

Query: 142 TSFTMFAVACVSSMAVGLRAMHKPGVSTFFSGIGIVSNVVLNWILIFGKFGFPAMGIQGA 201
              ++ ++  V  M   L A+       + S   +  N  LN+ LI G +G P +G  G+
Sbjct: 146 RWGSLGSLIGVGLMRSFLPAIGAAKRLLWVSLASVGVNGFLNYGLIHGAYGLPRLGFLGS 205

Query: 202 AIATVLSGAIEIACLYSYLYGKKHLMAFGWQDIKAVIDWPKISRFLRLSLPTTFNFLIWA 261
           A AT ++  +    L + L+ +     F    +    + P +     +  P    + + +
Sbjct: 206 AAATSITVWLSALVLMALLHLRPRYRHF---VVATRPNVPLMGELFGIGWPVAITYGVES 262

Query: 262 AGLFTYHAIMGQTGVQGLAALSVMTPVESISLSLLIGMSTAAAVLVGNQLGAKNYEAVYY 321
                   ++G  G   LAA  +   V S++  + + +  AA V VG   GA    A  +
Sbjct: 263 TLFLATGLMVGLLGESQLAAHQIALNVASVAFMVPLAIGQAANVRVGFWSGAGQPLAARH 322

Query: 322 QAIGVTACSVLVGIVVAIGLYLVQIP--VLGAFTALTPETRELSEKFMLILCLGIV---- 375
              G  A ++ V  +   GL L+  P  ++G +  L       + K    L LG+     
Sbjct: 323 --AGFVALALGVAFMTLSGLVLIAAPHWIVGLYLHLDDPANAATVKLASSL-LGVAAIFQ 379

Query: 376 LRSFPMTAIVGVLRAGGDVKFCLGQDIVAQWCIGIP 411
           +     T   G LR   D +  +       W IG P
Sbjct: 380 IVDGMQTVGSGCLRGLKDTRVPMIAAAFGYWAIGFP 415



 Score = 27.3 bits (59), Expect = 0.001
 Identities = 34/143 (23%), Positives = 62/143 (43%), Gaps = 14/143 (9%)

Query: 248 RLSLPTTFNFLIWAAGLFTYHAIMGQTGVQGLAALSVMTPVESISLSLLIGMSTAAAVLV 307
           RL+ P     L   A   T   ++G  G   LAA  +   +  + ++LL G+ T+ +V V
Sbjct: 25  RLAAPLAIAQLSQMAMGVTDTILLGSLGPDALAAGGLGANLFFVVVTLLQGVLTSVSVSV 84

Query: 308 GNQLGAKNYEAVYYQAIGVTACSVLVGIVVAIGLYLVQIPVLGAFTALTPETRELSEKFM 367
            +  GA++   V +            G+V+++   L+ +P     +  TP      E  +
Sbjct: 85  SHARGAQDEGRVPH--------IYWTGLVLSV---LLSVPAFFLLSFATPILLAFGEPAL 133

Query: 368 LILCLG---IVLRSFPMTAIVGV 387
           L   +G    VLR   + +++GV
Sbjct: 134 LAHNVGEYSAVLRWGSLGSLIGV 156