Pairwise Alignments

Query, 458 a.a., MATE family efflux transporter from Vibrio cholerae E7946 ATCC 55056

Subject, 452 a.a., MATE efflux family protein (RefSeq) from Shewanella sp. ANA-3

 Score = 67.4 bits (163), Expect = 9e-16
 Identities = 64/298 (21%), Positives = 126/298 (42%), Gaps = 4/298 (1%)

Query: 17  RRLIAIALPITLQNIMFSSRGLVDVLMLGQLGEAEIAAVGVAARATFVTTIMLVGVTTGG 76
           R L+ ++LP  +  +      L D   + QLG   +AA+      T + + + +G+  G 
Sbjct: 14  RVLLNMSLPNLIGIMTILGFSLADTFFISQLGTEALAAISFTFPVTLIISSIAIGIGAGV 73

Query: 77  ALLTAQYWGAGDRKGVRESTALTWLVSNFFAFFTVLLFLFFPQQIMSLTTDSEQVNALGS 136
           +    +  G+G+    +       L++         L   F + + SL   ++    L  
Sbjct: 74  STNLGRLIGSGNAPRAKVFLHDALLLTFILIASLSALGSIFIKPLFSLLGANDTSLPLIH 133

Query: 137 QYLIITSFTMFAVACVSSMAVGLRAMHKPGVSTFFSGIGIVSNVVLNWILIFGKFGFPAM 196
            Y++        +  +     GLR+            +  + N++L+ +LIFG   FP +
Sbjct: 134 DYMMYWYVGAPLLVLLMVGNQGLRSTGDTRSPAMIMALAAIINLILDPLLIFGIGPFPRL 193

Query: 197 GIQGAAIATVLSGAIEIACLYSYLYGKKHLMAFGWQDIKAV-IDWPKISRFLRLSLPTTF 255
            IQGAAIAT+ S  I ++     L  K++++ +   DI  +  +W K++    ++ P   
Sbjct: 194 EIQGAAIATLFSWLIALSLSGYLLIIKRNMLEWAAFDIDRMRANWSKLA---HIAQPAAL 250

Query: 256 NFLIWAAGLFTYHAIMGQTGVQGLAALSVMTPVESISLSLLIGMSTAAAVLVGNQLGA 313
             LI         A++       +AA    T +ES+ L +++ +S++    +   LGA
Sbjct: 251 MNLINPLANAVIMAMLAHIDHSAVAAFGAGTRLESVLLIVVMALSSSLMPFIAQNLGA 308



 Score = 53.5 bits (127), Expect = 1e-11
 Identities = 54/214 (25%), Positives = 93/214 (43%), Gaps = 13/214 (6%)

Query: 8   LSHMRGDFFRRLIAIALPITLQNIMFSSRGLVDVLMLGQLGEAEIAAVGVAARATFVTTI 67
           +  MR ++  +L  IA P  L N++      V + ML  +  + +AA G   R   V  I
Sbjct: 231 IDRMRANW-SKLAHIAQPAALMNLINPLANAVIMAMLAHIDHSAVAAFGAGTRLESVLLI 289

Query: 68  MLVGVTTGGALLTAQYWGAGDRKGVRESTALTWLVSNFFAFFTVLLFL---FFPQQIMSL 124
           +++ +++      AQ  GAG  +  +++  L+     F   F  LL++   FF Q +  L
Sbjct: 290 VVMALSSSLMPFIAQNLGAGQTQRAKQALLLSL---KFIFVFQTLLYIPLAFFAQPLAHL 346

Query: 125 TTDSEQVNALGSQYLIITSFTMFAVACVSSMAVGLRAMHKPGVSTFFSGIGIVSNVVLNW 184
            +   QV    S Y+++       +  V   A  L A H+P  S     I +   V+L  
Sbjct: 347 FSTDPQVLEWLSFYILVLPCAYGPLGIVIIFATALNAYHRPMSSLV---INLCRLVLL-- 401

Query: 185 ILIFGKFGFPAMGIQGAAIATVLSGAI-EIACLY 217
           +L     G    G++G  +A  ++  +  IAC Y
Sbjct: 402 MLPLAALGSYIDGVKGLLLALPITNLLMGIACYY 435



 Score = 35.4 bits (80), Expect = 4e-06
 Identities = 37/152 (24%), Positives = 62/152 (40%), Gaps = 8/152 (5%)

Query: 247 LRLSLPTTFNFLIWAAGLFTYHAIMGQTGVQGLAALSVMTPVESISLSLLIGMSTAAAVL 306
           L +SLP     +            + Q G + LAA+S   PV  I  S+ IG+    +  
Sbjct: 17  LNMSLPNLIGIMTILGFSLADTFFISQLGTEALAAISFTFPVTLIISSIAIGIGAGVSTN 76

Query: 307 VGNQLGAKNY-EAVYYQAIGVTACSVLVGIVVAIGLYLVQ--IPVLGAFTALTPETRELS 363
           +G  +G+ N   A  +    +    +L+  + A+G   ++    +LGA     P    L 
Sbjct: 77  LGRLIGSGNAPRAKVFLHDALLLTFILIASLSALGSIFIKPLFSLLGANDTSLP----LI 132

Query: 364 EKFMLILCLGIVLRSFPMTAIVGVLRAGGDVK 395
             +M+   +G  L    M    G LR+ GD +
Sbjct: 133 HDYMMYWYVGAPLLVLLMVGNQG-LRSTGDTR 163