Pairwise Alignments

Query, 836 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 822 a.a., AttF component of AttEFGH ABC transport system / AttG component of AttEFGH ABC transport system from Pseudomonas fluorescens FW300-N2E2

 Score =  327 bits (837), Expect = 2e-93
 Identities = 264/836 (31%), Positives = 401/836 (47%), Gaps = 53/836 (6%)

Query: 25  VKALLGHYRRYPLQICLVWLGLTLGVSLLVGVTAINHHARQSYEHGEKLFSNPLPYRIRS 84
           +KALL H+R++P+Q   V  GL L  SLL GV A+N  AR SY    +L     P    S
Sbjct: 7   LKALLSHWRQHPVQFFSVLTGLWLATSLLTGVQALNSQARDSYARASQLIGGE-PQASLS 65

Query: 85  KHIANKIPQGLYIQLRRDGFQQCVPFDDYRFSTTSGLDLILQ--GIDPVALLSIDNGKPL 142
                  PQ  +++LRR G+    P    R       D  LQ  GIDPV   S+  G  L
Sbjct: 66  APGGGTFPQQWFVELRRQGWPVS-PVLQARVLLKDHEDQRLQLTGIDPV---SLPPGAAL 121

Query: 143 AQQSG-----LQLMNPPYPVMVSQELAKLQDWQEGDYIALTDGSQLGPIVIDRHNQVTGM 197
           A Q+      +     P    ++ +  +     EGD     DG  L P+   + +   G+
Sbjct: 122 AGQAREMTEVVAFFTDPGRTWIAPQTLQALGLTEGDRPRSVDGQTLPPLHA-QEDMAPGV 180

Query: 198 RVVADLSLVRMLKKGSGLTVIACADMPPAKLDK-LKKSLPNGLTLTRSTR-SELESLTQA 255
            ++ D+   + +    GL       + PA     L ++    L L  +   + L  LT++
Sbjct: 181 -LLMDIGFAQQVL---GLPEQLSRLLLPATFSAALPEAFTGRLQLKHADEENNLSRLTES 236

Query: 256 FHLNLTAMGMLAFLVGIFIFYQAMSLSMVQRQPLVGTLRQIGVNGWQLAKALLIELLVLV 315
           FHLNL A+G L+F+VG+FI + A+ L++ QR+ L+ TLR  GV+   L  +L IEL  L 
Sbjct: 237 FHLNLDALGFLSFVVGLFIVHAAIGLALEQRRSLLRTLRACGVSARVLVTSLTIELGALA 296

Query: 316 LVSWVCGNVLGLLLANQLIPSVASSLGYLYNANV----DLAIGWDWSWSSYSLLMALLAA 371
           L+  + G + G  LA+ L+P VA+SL  LY A V    +L+  W +S    SLL ALLA 
Sbjct: 297 LLGGIAGVLSGYWLASLLLPDVAASLRGLYGAEVAGHLNLSPWWWFSGVGLSLLGALLAG 356

Query: 372 FASCTWPLVRLLRSQPIRLSARLSLVRFAGKEFKLQALLACALCVAAVAIYQAPKSQQSG 431
             S    L+R  R   + L+   +  +   +  + Q  +A    + A +      S  SG
Sbjct: 357 ADS----LLRAARLPLLALANPQAWHQAHAQWLRRQGWVATVAALIAASALIWGDSLASG 412

Query: 432 FAIIGLMLLSVALFTPYIIWTLFTSFSYTLRWVKVRWFFADAAASMSYRGVATMAFMVAL 491
           F ++  +LL  AL  P ++ +     S   R V  +WF AD    +    +A MA ++AL
Sbjct: 413 FVLMTALLLGAALALPVLLNSALKRLSSRSRSVLGQWFLADCRQQLPTLSLALMALLLAL 472

Query: 492 AANIGVETMVGSFRDTTDRWLSQRLAADIYLYPSNSV-ASRMSQWLGQQPEVDAVWWRWE 550
           AANIG  +M   FR T   WL QRL A++Y+ P     A  +  WL QQP + AV   W+
Sbjct: 473 AANIGAGSMTAGFRQTFSNWLEQRLTAELYINPQTPAQADELHAWLKQQPAITAVVPLWQ 532

Query: 551 KDFASQQGPVQIVSTGASDGELDSLTVKLGVP-------NYWYHLHHARGVMISESMALK 603
                Q  P  I       G +D    +   P         W  L  A  +M+SE +A +
Sbjct: 533 VSVPLQGWPTDI------HGIIDHPHYRQHWPLLDSAGDKPWEQLAAADTLMLSEQLARR 586

Query: 604 LGIRPGDLIDLPEPMGSGWA--VFGVYYDYGNPYHQVMMSHQN----WMKAFAGTGNVAL 657
           L +  GD + LP P G  WA  + G+Y DYGNP   V+++  +    W        N+ +
Sbjct: 587 LKVGIGDQLTLPTPQGP-WALRIVGIYADYGNPKGHVLVNVDHLLAHWPNLTPNRFNLRI 645

Query: 658 AVVLKEGLTGESVKKRLDTIFRLDADRIFDNTNIHSHAMRVFDRTFSIAGTLGNITLFIA 717
                E     ++   L   F LD  RI D   +   + +VF+RTF+    L ++TL +A
Sbjct: 646 -----EPSAIPALLTALQDRFSLDDSRIVDQARLKGWSTQVFERTFAATAALNSLTLAVA 700

Query: 718 VCGIFFSTLAGETSRLRHISLLRCLGVSGKELVLIGGMQLFVFGAISLLIALPLGLTLAK 777
              +F S L    SRL  ++ L  LGV+ ++L+L+   Q ++   ++L++ALPLG+ LA 
Sbjct: 701 GVALFISLLTQSQSRLAQLAPLWALGVTRRQLMLLNLGQTWLLALLTLVLALPLGIALAW 760

Query: 778 LVIDVVIKHSFGWTMQLQMVPGEYVYTVVWSMMALILAGALPIIRLARKSPMKSLR 833
            +  V+   +FGW + L+++P + V  +  +M+A +LA A P+  L R  P   LR
Sbjct: 761 CLDTVINVQAFGWRLPLRVLPLQLVQLLALAMLATLLASAWPLYALYRTQPADLLR 816