Pairwise Alignments

Query, 836 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 888 a.a., AttF component of AttEFGH ABC transport system / AttG component of AttEFGH ABC transport system from Acidovorax sp. GW101-3H11

 Score =  121 bits (304), Expect = 2e-31
 Identities = 144/606 (23%), Positives = 244/606 (40%), Gaps = 77/606 (12%)

Query: 249 LESLTQAFHLNLTAMGMLAFLVGIFIFYQAMSLSMVQRQPLVGTLRQIGVNGWQLAKALL 308
           + +L++A+ +NLT + ++A   G F+ +  ++LS+ QR P    L  +G    Q    +L
Sbjct: 267 ISNLSRAYRVNLTVLALVALFTGAFLVFSVLALSVAQRGPQFALLAVLGATPRQRLLLVL 326

Query: 309 IELLVLVLVSWVCGNVLGLLLANQLIPSVASSLGYLYNANVDLAIGWDWSWSSYSLLMAL 368
            E   L L+  V G  LG  LA   +  +   LG  Y A V  A+ W    +     + +
Sbjct: 327 AESAALGLLGSVLGITLGTALAATALQLLGGDLGGGYFAGVRPALQWSAPAALVYGALGV 386

Query: 369 LAAFASCTWPLVRLLRSQPIRL------------SARLSLVRFAGKEFKLQALLACALCV 416
            AA     WP     +  P +                L LV  AG      ALLA A  V
Sbjct: 387 AAALVGGWWPARAAQQLPPAQTLKGLGTAASQADRGTLGLVLLAG-----GALLALAPPV 441

Query: 417 AAVAIYQAPKSQQSGFAIIGLMLLSVALFTPYIIWTLFTSFSYTLRWVKVRWFFADAAAS 476
             V +        + +  IGL+L+      P+ +  L  +         +     + A  
Sbjct: 442 GGVPL--------AAYVAIGLLLVGGIALLPWGMARLLAALQPLAARHTLPLLALERARR 493

Query: 477 MSYRGVATMA---FMVALAANIGVETMVGSFRDTTDRWLSQRLAADIYLYPSNSVASRMS 533
           M  RG A +A    + +L+  + +  MV SFR +  +WL   L + +Y+  + S +S   
Sbjct: 494 M--RGSAAIAVGGVVASLSLAVALTVMVASFRGSVTQWLDAVLPSPLYVRSALSTSSTTG 551

Query: 534 QWLGQQP----EVDAVWWRWEKDFASQQGPVQ---------IVSTGASDGELDSLTV--- 577
                 P    E  A     E+  A +  PVQ         ++S    D    SL +   
Sbjct: 552 TEAALLPAGFAEAVAQLPGVERVQALRASPVQLSPTLPALAVLSRPLGDNPAQSLPMVGE 611

Query: 578 KLGVPNYWYHLHHARGVMISESMALKLGIRPG----DLIDLPEPMGSG-------WAVFG 626
            L VP          GV ISE++    G+RPG     L +  +P           + + G
Sbjct: 612 PLSVP------AGRTGVYISEAVVDLYGVRPGMEWPALSESFKPFACDGHAQAAIFYIAG 665

Query: 627 VYYDYGNPYHQVMMSHQNWMKAFAGTGNVALAVVLKEGLTGESVKKRLDTIFRLDADR-- 684
           V+ DY      V +    W++         LA+  +EG    +++  + T+    A R  
Sbjct: 666 VWRDYARQSGAVALDRAAWLRLTGDARTSDLALWPREGTDTATLQTAIRTLAATHAGRTA 725

Query: 685 -----------IFDNTNIHSHAMRVFDRTFSIAGTLGNITLFIAVCGIFFSTLAGETSRL 733
                         +  I   ++R+FDR+F++   L  + + I + G+  S  A   +R 
Sbjct: 726 SAGDHSEALVEFASSGAIRDRSLRIFDRSFAVTYWLQAVAIAIGLFGVAASFSAQVLARR 785

Query: 734 RHISLLRCLGVSGKELVLIGGMQLFVFGAISLLIALPLGLTLAKLVIDVVIKHSFGWTMQ 793
           +   LL  LG++ ++++ +   +   + A+     + LGL ++ +++ VV   SF WTM 
Sbjct: 786 KEFGLLAHLGLTRRQILTVVAGEGAAWTAVGAAAGMLLGLAVSVVLVHVVNPQSFHWTMD 845

Query: 794 LQMVPG 799
           L  VPG
Sbjct: 846 L-AVPG 850