Pairwise Alignments

Query, 836 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 850 a.a., hypothetical protein (RefSeq) from Shewanella loihica PV-4

 Score =  324 bits (830), Expect = 1e-92
 Identities = 258/841 (30%), Positives = 422/841 (50%), Gaps = 50/841 (5%)

Query: 25  VKALLGHYRRYPLQICLVWLGLTLGVSLLVGVTAINHHARQSYEHGEKLFSN-------P 77
           ++    HY++ PLQ   + +G+ L V+LL GV A N  A  SY    +L S        P
Sbjct: 24  LRVFAAHYKKAPLQAGAILIGIVLAVTLLTGVRATNESAIDSYGQASELLSGQASNLVTP 83

Query: 78  LPYRIRSKHIANKIPQGLYIQLRRDGFQQCVPF--------DDYRFSTTSGLDLI--LQG 127
           LP +  S          LY  LR  GF   +            +R+  T G DLI  L  
Sbjct: 84  LPGKALS--------DSLYFDLRTQGFHHSLAVLQGSALDSAQHRWQVT-GSDLIAALSA 134

Query: 128 IDPV------ALLSIDNGKPLAQQSGLQLMNPPYPVMVSQELAKLQDWQEGDYIALTDGS 181
           I P        +   D+  P++    L  M    P++V  E A  +  QE  +++L D  
Sbjct: 135 ITPSNSDRPQTVEPSDSKIPMSGPLPLAAMLAGEPIVVMSE-ANAKRLQE-PWLSLND-M 191

Query: 182 QLGPIVIDRHNQVTGMRVVADLSLVR-MLKKGSGLTVIACADMPPAKLDKLKKSLPNGL- 239
           +L  + +D   Q+ G R++ D+SL + +L K   L+ IA  D P     +L  SL  G  
Sbjct: 192 RLKVMAVDESYQL-GDRLLMDISLAQQLLGKPGELSYIALFDPPGEHQQQLLTSLLTGRG 250

Query: 240 TLTRSTRSE-LESLTQAFHLNLTAMGMLAFLVGIFIFYQAMSLSMVQRQPLVGTLRQIGV 298
            L  S   E +++LT +FHLNLTAM +LAF+VG+FI Y  +  S+++R+ L+  L+Q GV
Sbjct: 251 ELVESDNGEAMKALTNSFHLNLTAMSLLAFIVGLFIAYNGVRYSLLKRKRLIIQLQQQGV 310

Query: 299 NGWQLAKALLIELLVLVLVSWVCGNVLGLLLANQLIPSVASSLGYLYNANVDLAIGWDWS 358
               +  AL +EL +LVL+  + G +LGL L+  L P V+ +L  LY AN+ L   W W 
Sbjct: 311 RRAAIMFALGLELTLLVLLGSLIGFILGLQLSFWLQPMVSVTLEQLYGANI-LPGSWRWQ 369

Query: 359 WSSYSLLMALLAAFASCTWPLVRLLRSQPI-RLSARLSLVRFAGKEFKLQALLACALCVA 417
           W + + L+ L+AA  +C   L+R L +QP+ + S +LS  R +        LLAC L + 
Sbjct: 370 WLAQASLLTLIAALLAC-GSLLRELLNQPLAQSSGQLSQQRSSQLAQNRLMLLACLLGIM 428

Query: 418 AVAIYQAPKSQQSGFAIIGLMLLSVALFTPYIIWTLFTSFSYTLRWVKVRWFFADAAASM 477
            + +    +  +    ++GL+++++ L  PY++  L            + +  ++    +
Sbjct: 429 TLILMPLSQDYRFTMTLLGLVVIAIPLALPYLLRQLIGLLQKISPKGLIGYQISETRELL 488

Query: 478 SYRGVATMAFMVALAANIGVETMVGSFRDTTDRWLSQRLAADIYLYPSNSVASRMSQWLG 537
           +   +A MA ++AL ANI + ++VGSF  T  +WL  RL A +YL P  S  + + + L 
Sbjct: 489 APLSLAMMAMLLALTANIAMNSLVGSFEITLKQWLDARLHAQLYLRPPASQMAEVEKMLS 548

Query: 538 QQPEVDAVWWRWEKDFASQQGPVQIVSTGASDGELDSLTVKLGVPNYWYHLHHARG---- 593
           Q PEV  ++ +W      QQ P+ +++      E  ++ +K   P+ W     A      
Sbjct: 549 QAPEVTGLYKQWLLKSHYQQTPIFLLTRDPYSIEHTTI-IKQAKPDLWRDFFSADPETKP 607

Query: 594 -VMISESMALKLGIRPGDLIDLPEPMGSGWAVFGVYYDYGNPYHQVMMSHQNWMKAFAGT 652
             +ISE  A+K G + GD I +     +   +  +YYDYGNPY +V++    W +A  G 
Sbjct: 608 LALISEPFAIKQGKQLGDKIRIAALGETELTIGAIYYDYGNPYGEVIIPPSLWRRANLGE 667

Query: 653 GNVALAVVLKEGLTGESVKKRLDTIFRLDADRIFDNTNIHSHAMRVFDRTFSIAGTLGNI 712
             ++LA+ L   +T  S  +++ T F+L    ++    I + A+ +F RTFSI   L ++
Sbjct: 668 TPLSLALTLSTDVTRFS--QQIQTRFQLPDALVYSQEKIKAQAITMFKRTFSITQVLNSL 725

Query: 713 TLFIAVCGIFFSTLAGETSRLRHISLLRCLGVSGKELVLIGGMQLFVFGAISLLIALPLG 772
           TL +A  G+F +      +RL  I+ L  LGV+ ++LV +   Q+ +   ++ L+ALP G
Sbjct: 726 TLMVAAIGLFSACYMLTQARLAPIARLYALGVNRRQLVWLVVGQMLLMVLLTCLVALPTG 785

Query: 773 LTLAKLVIDVVIKHSFGWTMQLQMVPGEYVYTVVWSMMALILAGALPIIRLARKSPMKSL 832
             L  L+I  V   +FGWT+ +      Y+  V  +++A  LA A P+ +  R+  + SL
Sbjct: 786 ALLGYLLIHKVTLQAFGWTIAMVWDWLAYLELVGLALLASTLALAFPLYQQTRRPLVSSL 845

Query: 833 R 833
           +
Sbjct: 846 Q 846