Pairwise Alignments

Query, 836 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 756 a.a., membrane protein containing DUF214, permase predicted from Marinobacter adhaerens HP15

 Score =  165 bits (418), Expect = 8e-45
 Identities = 194/798 (24%), Positives = 335/798 (41%), Gaps = 92/798 (11%)

Query: 27  ALLGHYRRYPLQICLVWLGLTLGVSLLVGVTAINHHARQSYEHGEKLFSNPLPYRIRSKH 86
           AL  HYRR+PLQ+  +   + L   L  GV  +   AR S +  E   +        ++ 
Sbjct: 6   ALFSHYRRHPLQLLALAAMIVLATMLWTGVHHLTSQARASLDQSESAVAERQQV---ART 62

Query: 87  IANKIPQGLYIQLRRDGFQQCVPFDDYRFSTTSGLDLILQGIDPVALLSIDNGKPLAQQS 146
             + +    +++LRR G   CV       S   G  ++  G+DP+A        P  Q+S
Sbjct: 63  DVSPVTVDDFVELRRAGL--CV-MPWLEVSEPEGGRVV--GVDPLAAGCFQ--APGGQES 115

Query: 147 GLQLMNPPYPVMVSQELAKLQDWQEGDYIALTDGSQLGPIVIDRHNQVTGMRVVADLSLV 206
                    P +   E A+L         A   GS+L  +V D H++             
Sbjct: 116 PWDGELDGRPFVDISEAAEL---------AREQGSELSLLVSDDHSK------------- 153

Query: 207 RMLKKGSGLTVIACADMPPAKLDKLKKSLPNGLTLTR-STRSELESLTQAFHLNLTAMGM 265
                          D+PP            G  L   S       L  +F LNL A+G+
Sbjct: 154 --------------GDLPP------------GYQLVPFSVGPATGELGDSFLLNLDALGV 187

Query: 266 LAFLVGIFIFYQAMSLSMVQRQPLVGTLRQIGVNGWQLAKALLIELLVLVLVSWVCGNVL 325
           L  L+   +      L + QR+     L + GV   ++ + L++E+L+L  V  + G  L
Sbjct: 188 LVLLITALLVRSVYLLGLAQRRDSFALLHRFGVPHGRVNRLLVVEILLLAAVCVLPGIWL 247

Query: 326 GLLLANQLIPSVASSLGYLYNANVDLAIGWDWSWSSYSLLMALLAA-FASCTWPLVRLLR 384
           G  LA  L      +L  L++  +    G  W     +++  +L A  A    P+ R L 
Sbjct: 248 GRWLAAGLGSGFGQALEGLFDQPLYAGQGGSWLVPLVTMMAVILVACLADFLRPIFRGLV 307

Query: 385 SQPIRLSARLSLVRFAGKEFKLQALLACALCVAAVAIYQAPKSQQSGFAIIGLMLLSVAL 444
               R    + LV  AG        LA  + V  +            F  + ++ ++  +
Sbjct: 308 GGNRRYGGLVLLVLVAG--------LALTVWVTDLLWL---------FIAVAMVFVAAGI 350

Query: 445 FTPYIIWTLFTSFSYTLRWVKVRWFFADAAASMSYRGVATMAFMVALAANIGVETMVGSF 504
             P +I +L    S   R ++ RW   + A       +  +A   A+A  + V+ +V +F
Sbjct: 351 LAPRLIASLADWRSGHDRDLQARWRHRELAVLARRLALPLVALQFAMAMVLAVQALVTTF 410

Query: 505 RDTTDRWLSQRLAADIYL-YPSNSVASRMSQWLGQQPEVDA--VWWRWEKDFASQQG--- 558
             T DRWL+QRL AD Y+  P ++ A+    WL +QP + A  +W R  +  A+  G   
Sbjct: 411 ESTFDRWLAQRLEADYYVEVPESADAALALDWLAEQPGLSASGLWHRVIRGRATLPGGEH 470

Query: 559 ----PVQIVSTGASDGELDSLTVKLGVPNYWYHLHHARGVMISESMALKLGIRPGD-LID 613
                V + + G     +    +    P  W  L   +GVM++E +A +  I  G  L  
Sbjct: 471 EGDTRVDVFAIGPVGPLVTGWELFESAPQPWQRLQQGQGVMVNEQLARRQDIAVGQTLTV 530

Query: 614 LPEPMGSGWAVFGVYYDYGNPYHQVMMSHQNWMKAFAGTGNVALAVVLKEGLTGESVKKR 673
           L         V  +Y DYG P  ++++ H + +     TG  +L+ V    L+ E++ + 
Sbjct: 531 LFGSQSFELPVLAIYPDYGRPAGEILI-HPSVLPTEFETGFQSLS-VSPGNLSIEALTEG 588

Query: 674 LDTIFRLDADRIFDNTNIHSHAMRVFDRTFSIAGTLGNITLFIAVCGIFFSTLAGETSRL 733
           L  +++++A  + DN  I   A  +FD+TF +   +  +TL +A   +        ++R 
Sbjct: 589 LKGVWQVEALTVRDNRAIEELASAIFDQTFLLTRAMTTLTLILAAIALLMMGWVFFSTRA 648

Query: 734 RHISLLRCLGVSGKEL-VLIGGMQLFVFGAISLLIALPLGLTLAKLVIDVVIKHSFGWTM 792
            +  LL   G+S ++    +  + + + GAI+LL ALPLG+ L  +++  +   +FGW++
Sbjct: 649 WYFRLLVVWGLSRRQASAQLVRLSVSLTGAITLL-ALPLGVWLTWVLVHRINPIAFGWSL 707

Query: 793 QLQMVPGEYVYTVVWSMM 810
            + + PG ++   V SM+
Sbjct: 708 PMAVYPGFWLELGVLSML 725



 Score = 25.8 bits (55), Expect = 0.010
 Identities = 20/51 (39%), Positives = 27/51 (52%), Gaps = 3/51 (5%)

Query: 7   TWMAVFVCKEDSCMLWPVVKALLGHYRRYPLQICLVWLGLTLGVSLLVGVT 57
           T MAV +    +  L P+ + L+G  RRY     LV L L  G++L V VT
Sbjct: 285 TMMAVILVACLADFLRPIFRGLVGGNRRYG---GLVLLVLVAGLALTVWVT 332