Pairwise Alignments

Query, 836 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 897 a.a., conserved hypothetical protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  323 bits (827), Expect = 4e-92
 Identities = 249/869 (28%), Positives = 418/869 (48%), Gaps = 61/869 (7%)

Query: 24  VVKALLGHYRRYPLQICLVWLGLTLGVSLLVGVTAINHHARQSYEHGEKLFSNPLPYRIR 83
           V+K    HYR  PLQ   + LG+ L V+LL+GV A N +A +SY    +L S      + 
Sbjct: 29  VLKVFFAHYRHAPLQAGAILLGIALAVTLLIGVKATNDNAIRSYSEATELLSQRADVLLT 88

Query: 84  SKHIANKIPQGLYIQLRRDGFQQCVPFDDYRFSTTSGLDLILQGIDPVALLSI------- 136
           S    + + + +Y  LR+ G  Q +     R +  +G    ++G D VA L+        
Sbjct: 89  SPVGQDNLDESVYFSLRQAGISQSLAVVSGRVAGQNGQYWQIEGSDIVAALTATLTSKNT 148

Query: 137 ---DNGKPLAQQSGLQLMNPPYPVMVSQELAKLQDWQEGDYIALTDGSQLGPIVIDRHNQ 193
               N K  A  S + + + P   ++S E   +        IA      L   +     +
Sbjct: 149 SPSSNSKATAN-SAVSMGDLPLAALMSGEPVVVMSDSLASKIAPNGQLSLAQSIAPSTLK 207

Query: 194 VT--------GMRVVADLSLVRMLKKGSGLTVIACADMPPAKLDKLKKSLPN-GLTLTRS 244
           V         G  ++ D+SL + L    G            KL  LK+ L   G+T   +
Sbjct: 208 VIRVDDSWGLGSAILTDISLAQNLLGMQGKLSYIALFSDRDKLAALKQRLDTLGITPDLA 267

Query: 245 TRSE------LESLTQAFHLNLTAMGMLAFLVGIFIFYQAMSLSMVQRQPLVGTLRQIGV 298
             S+      L +LT++FHLNL AM MLAF+VG+FI Y  +  S+++RQ L+  L Q G+
Sbjct: 268 NYSQQDQGQALMALTRSFHLNLNAMSMLAFVVGLFIAYNGVRYSLMKRQRLLIQLLQQGL 327

Query: 299 NGWQLAKALLIELLVLVLVSWVCGNVLGLLLANQLIPSVASSLGYLYNANVDLAIGWDWS 358
               +  ALL ELL LV++  V G +LGL L++ L P VA +L  LY A++   I W W 
Sbjct: 328 KRLDVMLALLAELLFLVILGSVIGFILGLQLSHWLQPMVAMTLEQLYGAHLLPGI-WQWH 386

Query: 359 WSSYSLLMALLAAFASCTWPLVRLLRSQPIRLSARLSLVRFAGKEFKLQALLACALCVAA 418
           W + ++ + L+AA A+C      L R    + + R    +   +  + Q +LAC L V A
Sbjct: 387 WLAQAIALTLVAALAACLPLYFDLTRQSLAQGANRYQQTKAHNQTHQRQFILACGLLVLA 446

Query: 419 VAIYQAPKSQQSGFAIIGLMLLSVALFTPYII-WTLFTSFSYTLRWVKVRWFFADAAASM 477
             ++   +S  +   ++G++ +++ L  P ++ W +     +T   +K  +  A+    +
Sbjct: 447 AILFPFSQSYNTSLILLGIVTVAIPLLLPQVLHWGVSLLLPFTRPGLK-HYLLAETRELI 505

Query: 478 SYRGVATMAFMVALAANIGVETMVGSFRDTTDRWLSQRLAADIYLYPSNSVASRMSQWLG 537
           +   +A MA ++AL+AN+ + T+VGSF  T   WL  RL AD+YL PS +  + +   L 
Sbjct: 506 APLSLAMMAILLALSANVAMNTLVGSFEQTLRSWLETRLHADLYLRPSANRMADVRDKLS 565

Query: 538 QQPEVDAVWWRWEKDF-ASQQGPV-QIVSTGASDGELDSL----TVKLGVPNYWYHLHHA 591
           Q P V  ++ +W+ D   S QGP  Q +       + +S+    T+K  +P+ W      
Sbjct: 566 QDPRVSGLYQQWQVDAEISIQGPTPQTIPVNLISRDDESIKYTSTLKDSLPDLWQRYFGG 625

Query: 592 RGVMISESMALKLGIRPGDLID---LPEPMGSGWAVFGVYYDYGNPYHQVMMSHQNWMKA 648
           + V++SE MA+K  +  GD +    L +   +   + G+YYD+GN  +++++SHQ W +A
Sbjct: 626 QFVLVSEPMAIKYQLMLGDKVTLNVLDKTTNNQVVIAGIYYDHGNTRNELIISHQLWQQA 685

Query: 649 F--------------AGTGNVALAVVLKEGLTG---------ESVKKRLDTIFRLDADRI 685
                           G  N + + VL + +           + ++ +L T   L   +I
Sbjct: 686 QLPLLPISLAASFYPLGQANKSSSSVLTQPIPTNGKRSEAELDELQMQLATELELAQAQI 745

Query: 686 FDNTNIHSHAMRVFDRTFSIAGTLGNITLFIAVCGIFFSTLAGETSRLRHISLLRCLGVS 745
           +   NI + A+ +F RTFSI   L ++TL +A  G+F + L    +R   ++ L  LGVS
Sbjct: 746 YSQANIKAQAIAMFKRTFSITLVLNSLTLLVAAIGLFSACLMLTQARQAPLARLYSLGVS 805

Query: 746 GKELVLIGGMQLFVFGAISLLIALPLGLTLAKLVIDVVIKHSFGWTMQLQMVPGEYVYTV 805
             +L  +   Q+ +   I+ LIA+P G  L  L+ID +   +FGWT+ +      Y   +
Sbjct: 806 RSKLRTMVFSQMLLVVVITCLIAMPTGALLGYLLIDKITLQAFGWTIPMIWDWFAYTKAI 865

Query: 806 VWSMMALILAGALPIIRLARKSPMKSLRE 834
           + +++   LA  LP+    R+  + SL++
Sbjct: 866 LIALVTCTLAVLLPLYWQTRRPLIASLQQ 894