Pairwise Alignments

Query, 836 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 857 a.a., multidrug ABC transporter substrate-binding protein from Burkholderia phytofirmans PsJN

 Score =  127 bits (318), Expect = 4e-33
 Identities = 139/596 (23%), Positives = 255/596 (42%), Gaps = 38/596 (6%)

Query: 242 TRSTRSELESLTQAFHLNLTAMGMLAFLVGIFIFYQAMSLSMVQRQPLVGTLRQIGVNGW 301
           TR   S  + L++A+ +N+  + ++A   G F+ +   +LS+V+R+     LR +G+   
Sbjct: 248 TRDAESRTDRLSRAYRINMNVLALVALFTGAFLVFSTQALSVVRRRAQFAMLRVLGLTRG 307

Query: 302 QLAKALLIELLVLVLVSWVCGNVLGLLLANQLIPSVASSLGYLYNANVDLAIGWDWSWSS 361
           QL + +L+E  +L L+  + G  LG  +A+  +    S LG  Y   V   +G++   S+
Sbjct: 308 QLLRQILVEGALLGLLGSLAGLALGYAMASSALHFFGSDLGGGYFPGVQPRVGFEPLASA 367

Query: 362 YSLLMALLAAFASCTWPLVRLLRSQPIRL----SARLSLVRFAGKEFKLQALLACALCVA 417
             L++ L  +      P +   R++P       +   +L R A     L  LLA A    
Sbjct: 368 LFLMLGLAVSVLGSLAPALEAARARPATALKAGAEEGALARLATPWPALLCLLAAAALTQ 427

Query: 418 AVAIYQAPKSQQSGFAIIGLMLLSVALFTPYIIWTLFTSFSYTLRWVK----------VR 467
              ++ AP     G+  + L+L+      P +   +F + S      +           R
Sbjct: 428 LPPLFDAPIG---GYLAVALLLVGGIALMPRVTALIFGAASRAFATRRRTGAAGTLALAR 484

Query: 468 WFFADAAASMSYRGV-ATMAFMVALAANIGVETMVGSFRDTTDRWLSQRLAADIY--LYP 524
              A   AS++  GV ++ A +VA+A       MV SFR + + WL   L+AD+Y  + P
Sbjct: 485 LANAPGHASIAMGGVLSSFALIVAMAI------MVASFRVSVEDWLVHLLSADLYVRVAP 538

Query: 525 SNSVA-------SRMSQWLGQQPEVDAVWWRWEKDFASQQGPVQIVSTGASDGELDSLTV 577
           +           SR++   G +    A       D A     +      A+D   +    
Sbjct: 539 NGDTGGLRLDEQSRLAAVPGIKTAAFARTSHLTLDPARPDIALLAREIDAADPGANLQIT 598

Query: 578 KLGVPNYWYHLHHARGVMISESMALKLGIRPGDLIDLP-EPMGSGWAVFGVYYDYGNPYH 636
              +P    H      V +SE+M      + G  + LP    G  + V GV+ DY     
Sbjct: 599 GAVLPPAELHAGET-PVWVSEAMVDLYQYKLGQRVRLPFGERGHVFVVAGVWRDYVRQTG 657

Query: 637 QVMMSHQNWMKAFAGTGNVALAVVLKEGLTGESVKKRLDTI-FRLDADRIFDNTNIHSHA 695
            + +   ++ +    T    +AV ++ G + + V + L  + F    D       I +  
Sbjct: 658 AIQIRLADFRRLTGDTSATDVAVTVQPGTSVDQVVEGLRALPFGASLDLSLPG-EIRART 716

Query: 696 MRVFDRTFSIAGTLGNITLFIAVCGIFFSTLAGETSRLRHISLLRCLGVSGKELVLIGGM 755
           + +FDR+F++   L  + + I + G+  +  A   +R R   +LR +GV+  +++ I  +
Sbjct: 717 LVIFDRSFAVTYLLEAVAIVIGLFGVAATFSAQTLARSREFGMLRHVGVTRSQVLAILAL 776

Query: 756 QLFVFGAISLLIALPLGLTLAKLVIDVVIKHSFGWTMQLQMVPGEYVYTVVWSMMA 811
           +  +  A  + +   LG  ++ +++ VV   SF W+M L  VP   + TV   M+A
Sbjct: 777 EGGMLTACGIALGFVLGSAISLILVFVVNPQSFHWSMSLH-VPWIALATVAVVMLA 831



 Score = 40.0 bits (92), Expect = 6e-07
 Identities = 61/240 (25%), Positives = 98/240 (40%), Gaps = 28/240 (11%)

Query: 115 FSTTSGLDLILQGIDPVALLS--IDNGKPLAQQSGLQLMNPPY-------PVMVSQELAK 165
           F+ TS L L     D +ALL+  ID   P A       + PP        PV VS+ +  
Sbjct: 564 FARTSHLTLDPARPD-IALLAREIDAADPGANLQITGAVLPPAELHAGETPVWVSEAMVD 622

Query: 166 LQDWQEGDYIALTDGSQLGPIVI-----DRHNQVTGMRVVADLSLVRMLKKGSGLTVIAC 220
           L  ++ G  + L  G +    V+     D   Q   +++   L+  R L   +  T +A 
Sbjct: 623 LYQYKLGQRVRLPFGERGHVFVVAGVWRDYVRQTGAIQI--RLADFRRLTGDTSATDVAV 680

Query: 221 ADMPPAKLDKLK---KSLPNGLTLTRSTRSELESLTQAFHLNLTAMGML----AFLVGIF 273
              P   +D++    ++LP G +L  S   E+ + T        A+  L    A ++G+F
Sbjct: 681 TVQPGTSVDQVVEGLRALPFGASLDLSLPGEIRARTLVIFDRSFAVTYLLEAVAIVIGLF 740

Query: 274 IFYQAMSLSMVQRQPLVGTLRQIGVNGWQLAKALLIELLVLVLVSWVCGNVLGLLLANQL 333
                 S   + R    G LR +GV   Q+   L +E  +L      CG  LG +L + +
Sbjct: 741 GVAATFSAQTLARSREFGMLRHVGVTRSQVLAILALEGGMLT----ACGIALGFVLGSAI 796