Pairwise Alignments

Query, 836 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 887 a.a., hypothetical protein (RefSeq) from Shewanella sp. ANA-3

 Score =  319 bits (817), Expect = 5e-91
 Identities = 249/862 (28%), Positives = 421/862 (48%), Gaps = 54/862 (6%)

Query: 24  VVKALLGHYRRYPLQICLVWLGLTLGVSLLVGVTAINHHARQSYEHGEKLFSNPLPYRIR 83
           V+K  L HYR  PLQ   + LGL L V+LL+GV A N +A +SY    +L S      + 
Sbjct: 26  VLKVFLAHYRHAPLQAGAILLGLALAVTLLIGVKATNDNAIRSYSEATELLSQRADVFLS 85

Query: 84  SKHIANKIPQGLYIQLRRDGFQQCVPFDDYRFSTTSGLDLILQGIDPVALLSIDNGKPLA 143
           +      + + +Y  LR+ G  Q +     R +  +G    ++G D VA L+        
Sbjct: 86  APIGQETLDESVYFSLRQAGISQSLAVVSGRVAGLNGQFWQIEGSDIVAALTASLSSKEE 145

Query: 144 QQ---SGLQLMNPPYP---------------VMVSQELA-KLQDWQEGDYIALTDGSQLG 184
           Q+   S  Q  NP                  V++SQ LA K+    + D    +      
Sbjct: 146 QKHNASTKQAANPKMSMGALPLAELMSGEPIVVISQSLANKIAPNGQLDLAPASFAPDKL 205

Query: 185 PIVIDRHNQVTGMRVVADLSLVRMLKKGSGLTVIACADMPPAKLDKLKKSLPN-GLTLTR 243
            ++    +   G  ++ D+SL + L    G            KL  LK+ L   G+T  R
Sbjct: 206 KVISIDDSWGLGSAILTDISLAQTLLGMQGKLSYIALFSDRDKLPTLKQRLETLGITPLR 265

Query: 244 STRSE------LESLTQAFHLNLTAMGMLAFLVGIFIFYQAMSLSMVQRQPLVGTLRQIG 297
           ++ S+      L +LT++FHLNL AM MLAF+VG+FI Y  +  S+++RQ L+  L Q G
Sbjct: 266 ASYSQQDQGQALMALTRSFHLNLNAMSMLAFVVGLFIAYNGVRYSLMKRQRLLIQLLQQG 325

Query: 298 VNGWQLAKALLIELLVLVLVSWVCGNVLGLLLANQLIPSVASSLGYLYNANVDLAIGWDW 357
           +   ++  ALL ELL+LV++  + G +LGL L++ L P VA +L  LY A++   I W W
Sbjct: 326 LARREVMLALLGELLLLVVLGSLMGFILGLQLSHWLQPMVAMTLEQLYGAHLLPGI-WQW 384

Query: 358 SWSSYSLLMALLAAFASCTWPLVRLLRSQPIRLSARLSLVRFAGKEFKLQALLACALCVA 417
            W + ++ + L+AA A+C      L R    + + R    +   K    Q +LAC L   
Sbjct: 385 RWLAEAITLTLVAALAACLPLYFDLTRQSLAQGANRYQQTQAHNKTHGRQFILACCLLTL 444

Query: 418 AVAIYQAPKSQQSGFAIIGLMLLSVALFTPYII-WTLFTSFSYTLRWVKVRWFFADAAAS 476
           A  +    +S  +   ++G++ +++ L  P ++ W +      T   +K  +  A+    
Sbjct: 445 AAILMPFSQSYNTSLVLLGMVAVAIPLLLPQVLHWGVSLLLPLTRPGLK-HYLLAETREL 503

Query: 477 MSYRGVATMAFMVALAANIGVETMVGSFRDTTDRWLSQRLAADIYLYPSNSVASRMSQWL 536
           ++   +A MA ++AL+AN+ + T+VGSF  T   WL  RL AD+YL PS +  + +   L
Sbjct: 504 IAPLSLAMMAILLALSANVSMNTLVGSFEQTLRSWLETRLHADLYLRPSANHMAEVRDKL 563

Query: 537 GQQPEVDAVWWRWEKDF------ASQQGPVQIVSTGASDGELDSLTVKLGVPNYWYHLHH 590
            Q P +  ++ +W+ +       A+Q  PV ++S   +  +  S T+K  +P+ W     
Sbjct: 564 SQDPRLSGLYQQWQVEAEVSPQGAAQTIPVNLISRDDASIQHTS-TLKQSLPDLWQTYFE 622

Query: 591 ARGVMISESMALKLGIRPGD---LIDLPEPMGSGWAVFGVYYDYGNPYHQVMMSHQNWMK 647
            R V++SE MA+K  ++ GD   L  L +   +   + G+YYD+GN  +++++SH+ W +
Sbjct: 623 GRYVLVSEPMAIKYQLQLGDSLALNVLDKTANNPVVIAGIYYDHGNTRNELIISHELWQR 682

Query: 648 AFAGTGNVALA-----VVLKEGLTG----------ESVKKRLDTIFRLDADRIFDNTNIH 692
           A      ++LA     V  +E  T           + ++ +L     L   +I+    I 
Sbjct: 683 AQLPVLPISLAASFHSVEPEEQTTATQRKLSEAELDELQGQLAVTLGLAQAQIYSQAKIK 742

Query: 693 SHAMRVFDRTFSIAGTLGNITLFIAVCGIFFSTLAGETSRLRHISLLRCLGVSGKELVLI 752
           + A+ +F RTFSI   L ++TL +A  G+F + L    SR   ++ L  LGVS  +L  +
Sbjct: 743 AQAIAMFKRTFSITLVLNSLTLLVAAIGLFSACLMLTQSRQAPLARLYSLGVSRNKLRTM 802

Query: 753 GGMQLFVFGAISLLIALPLGLTLAKLVIDVVIKHSFGWTMQLQMVPGEYVYTVVWSMMAL 812
              Q+ +   I+ L+A+P G  L  L+ID +   +FGWT+++      Y   ++ +++  
Sbjct: 803 VFSQMLLVVVITCLMAMPTGALLGYLLIDKITLQAFGWTIKMIWDWFAYGKAILIALVTC 862

Query: 813 ILAGALPIIRLARKSPMKSLRE 834
            LA  LP+    R+  + SL++
Sbjct: 863 TLAVLLPLYWQTRRPLIASLQQ 884