Pairwise Alignments

Query, 382 a.a., Na+/H+ antiporter NhaA from Vibrio cholerae E7946 ATCC 55056

Subject, 391 a.a., Na+/H+ antiporter (RefSeq) from Shewanella amazonensis SB2B

 Score =  441 bits (1133), Expect = e-128
 Identities = 240/386 (62%), Positives = 285/386 (73%), Gaps = 9/386 (2%)

Query: 1   MSDMIRDFFKMESAGGILLVIAAAIAMVIANSAMGEGYQAFLHTYV---FGM-----SVS 52
           M   IR+F   ESAGGILL++A A+AM++ANS +   YQ FL+T +   FG       + 
Sbjct: 1   MEKAIRNFLSQESAGGILLLVAVALAMLLANSPLSGLYQGFLNTEMQVRFGALDINKPLL 60

Query: 53  HWINDGLMAVFFLLIGLEVKRELLEGALKSRETAIFPAIAAVGGMLAPALIYVAFNFNDP 112
            WINDGLMA+FFLLIGLEVKRELLEGAL S   A  P  AA+GGML PA IY+ FNF+DP
Sbjct: 61  LWINDGLMALFFLLIGLEVKRELLEGALSSPSKASLPTFAAIGGMLVPAAIYLFFNFDDP 120

Query: 113 AAIQGWAIPAATDIAFALGIMALLGKRVPVSLKVFLLALAIIDDLGVVVIIALFYSSDLS 172
               GWAIPAATDIAFALGIMALLG RVPV+LKVFLLALAIIDDLGV+VIIALFYS+DLS
Sbjct: 121 VTKVGWAIPAATDIAFALGIMALLGNRVPVALKVFLLALAIIDDLGVIVIIALFYSTDLS 180

Query: 173 TIALTIGFIMTGVLFMLNAKHVTKLSIYLVAGLILWIAVLKSGVHATLAGVVIGFAIPLK 232
            ++L I  I    L  LN K VT L+ Y V G+ILWIAVLKSGVHATLAGVVI F IPL+
Sbjct: 181 MLSLVIAAIAVTGLVALNRKGVTSLAPYGVLGIILWIAVLKSGVHATLAGVVIAFCIPLR 240

Query: 233 GNKGEHSPLKHLEHALHPYVAFAILPVFAFANAGISLQGVSLAGLTSMLPLGVALGLFLG 292
              G  SP +HLEH+LHP+  F ILPVFAFANAG+ L  V    + S +P+G+ALGL LG
Sbjct: 241 AKDGS-SPSEHLEHSLHPWSNFLILPVFAFANAGVPLGNVGFDSILSPVPVGIALGLLLG 299

Query: 293 KPLGIFSFSWAAVKLGVAKLPEGINFKHIFAVSVLCGIGFTMSIFISSLAFGQANEAYDT 352
           KP+G+  FS+AAVKL +A+LP+GI +  I  V+V+CGIGFTMS+FI+SLAF    E Y  
Sbjct: 300 KPIGVLLFSYAAVKLRLAELPKGIGWHQIAPVAVMCGIGFTMSMFIASLAFEHGGELYGD 359

Query: 353 YARLGILMGSTTAALLGYSLLRLSLP 378
            AR+GIL+GS  AA++GY  L   LP
Sbjct: 360 LARIGILLGSLFAAVIGYFWLSKVLP 385