Pairwise Alignments

Query, 382 a.a., Na+/H+ antiporter NhaA from Vibrio cholerae E7946 ATCC 55056

Subject, 391 a.a., Na+/H+ antiporter NhaA (RefSeq) from Shewanella loihica PV-4

 Score =  456 bits (1172), Expect = e-133
 Identities = 243/388 (62%), Positives = 289/388 (74%), Gaps = 9/388 (2%)

Query: 1   MSDMIRDFFKMESAGGILLVIAAAIAMVIANSAMGEGYQAFLHTYV--------FGMSVS 52
           M   IR+F   ESAGGILL+ A  +AM++ANS +   YQ FLHT +           ++ 
Sbjct: 1   MEKAIRNFLSQESAGGILLMAAVILAMIMANSPLSGLYQGFLHTEMQVRVGSLDIDKTLI 60

Query: 53  HWINDGLMAVFFLLIGLEVKRELLEGALKSRETAIFPAIAAVGGMLAPALIYVAFNFNDP 112
           HWINDGLMA+FF+LIGLEVKRELLEGAL SRE A  P  AA+GGM+ PA IY+ FN+ DP
Sbjct: 61  HWINDGLMALFFMLIGLEVKRELLEGALSSREQASLPTFAAIGGMIFPAAIYLIFNYADP 120

Query: 113 AAIQGWAIPAATDIAFALGIMALLGKRVPVSLKVFLLALAIIDDLGVVVIIALFYSSDLS 172
               GWAIPAATDIAFALGIMALLG RVPV+LKVFLLALAIIDDLGVVVIIA+FYS+DLS
Sbjct: 121 ITQVGWAIPAATDIAFALGIMALLGSRVPVALKVFLLALAIIDDLGVVVIIAMFYSTDLS 180

Query: 173 TIALTIGFIMTGVLFMLNAKHVTKLSIYLVAGLILWIAVLKSGVHATLAGVVIGFAIPLK 232
            I+L +  +   +L  LN K VT L+ Y V GLILWIAVLKSGVHATLAGV+I F IPL+
Sbjct: 181 AISLVVAALAIVILVGLNRKGVTALAPYGVVGLILWIAVLKSGVHATLAGVIIAFCIPLR 240

Query: 233 GNKGEHSPLKHLEHALHPYVAFAILPVFAFANAGISLQGVSLAGLTSMLPLGVALGLFLG 292
              G  SP +HLEH+LHP+  F ILP+FAFANAG+ L G+SL  L S +P+G+ALGL LG
Sbjct: 241 AKDGS-SPSEHLEHSLHPWSTFVILPIFAFANAGVDLSGMSLGDLLSPVPVGIALGLLLG 299

Query: 293 KPLGIFSFSWAAVKLGVAKLPEGINFKHIFAVSVLCGIGFTMSIFISSLAFGQANEAYDT 352
           KPLG+  FS+ AVKL +A LPEG+ ++HI  V+V+CGIGFTMS+FISSLAF    EAY  
Sbjct: 300 KPLGVLLFSFVAVKLKLAALPEGMGWRHIAPVAVMCGIGFTMSMFISSLAFIGDGEAYGD 359

Query: 353 YARLGILMGSTTAALLGYSLLRLSLPLK 380
            ARLGIL GS  +A++GY  L   LP K
Sbjct: 360 LARLGILTGSIMSAVIGYFWLSKVLPEK 387