Pairwise Alignments

Query, 382 a.a., Na+/H+ antiporter NhaA from Vibrio cholerae E7946 ATCC 55056

Subject, 389 a.a., Na+/H+ antiporter (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  444 bits (1143), Expect = e-129
 Identities = 246/388 (63%), Positives = 286/388 (73%), Gaps = 9/388 (2%)

Query: 1   MSDMIRDFFKMESAGGILLVIAAAIAMVIANSAMGEGYQAFLHTYV---FGMSVSH---- 53
           M   IR+F   ESAGGILL+IA A AM++ANS +   YQ FL T V    G    H    
Sbjct: 1   MEKAIRNFLSQESAGGILLLIAVAFAMLMANSPLAGFYQGFLGTEVQVRVGALDLHKPLL 60

Query: 54  -WINDGLMAVFFLLIGLEVKRELLEGALKSRETAIFPAIAAVGGMLAPALIYVAFNFNDP 112
            WINDGLMA+FFLLIGLEVKRELLEGAL S   A  P  AA+GGML PA IY+ FN+ DP
Sbjct: 61  LWINDGLMALFFLLIGLEVKRELLEGALSSVAQASLPTFAAIGGMLVPAGIYLLFNYGDP 120

Query: 113 AAIQGWAIPAATDIAFALGIMALLGKRVPVSLKVFLLALAIIDDLGVVVIIALFYSSDLS 172
               GWAIPAATDIAFALGIMALLG RVPV+LKVFLLALAIIDDLGV+VIIALFYSSDLS
Sbjct: 121 ITQAGWAIPAATDIAFALGIMALLGSRVPVALKVFLLALAIIDDLGVIVIIALFYSSDLS 180

Query: 173 TIALTIGFIMTGVLFMLNAKHVTKLSIYLVAGLILWIAVLKSGVHATLAGVVIGFAIPLK 232
           T++L I  I    L  LN K VT L+ Y V GLILW+AVLKSGVHATLAGV+I F IPL+
Sbjct: 181 TVSLIIASIAIVGLVALNRKGVTSLAPYGVLGLILWVAVLKSGVHATLAGVIIAFCIPLR 240

Query: 233 GNKGEHSPLKHLEHALHPYVAFAILPVFAFANAGISLQGVSLAGLTSMLPLGVALGLFLG 292
              G  SP +HLEH+LHP+  F ILPVFAFANAG++L  +SL  L S +P+G+ALGL LG
Sbjct: 241 AKDGS-SPSEHLEHSLHPWSTFLILPVFAFANAGVALGNMSLDTLMSPVPVGIALGLMLG 299

Query: 293 KPLGIFSFSWAAVKLGVAKLPEGINFKHIFAVSVLCGIGFTMSIFISSLAFGQANEAYDT 352
           KP+G+  FS+ AVKL +A+LP+GI +K I  V+ +CGIGFTMS+FI+SLAF QA+  +  
Sbjct: 300 KPIGVMLFSFVAVKLKLAQLPDGIGWKQIAPVAAMCGIGFTMSMFIASLAFEQADPMFGD 359

Query: 353 YARLGILMGSTTAALLGYSLLRLSLPLK 380
            ARLG LMGS  AAL+GY  L   LP K
Sbjct: 360 LARLGTLMGSIFAALIGYFWLSKVLPKK 387