Pairwise Alignments

Query, 212 a.a., hypothetical protein from Vibrio cholerae E7946 ATCC 55056

Subject, 370 a.a., OmpA family protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 99.8 bits (247), Expect = 6e-26
 Identities = 52/146 (35%), Positives = 85/146 (58%), Gaps = 2/146 (1%)

Query: 50  DDDRDGVINARDLCPDTPKGSEIDNDGCGTFVKSSQMQQL-HILFANDSSSIEPAFLTQI 108
           D D DGV + +D CP TP   ++D+ GC  +    + + +  I FANDS+ ++  +   I
Sbjct: 215 DSDNDGVYDDKDECPATPATHKVDSVGCTLYENVKKQEDVGSIQFANDSAVVKKEYYKDI 274

Query: 109 RQMAEFLQTYPSTSIELQGYASKVGSAEHNLALSKQRSEAVRDQLL-RYGVAPERVNIVG 167
            ++A ++   P  ++E+ G+AS VG  E+N+ LS +R++AV   L+ +YG++  RV   G
Sbjct: 275 ERLANYMNKNPEFTVEIAGHASNVGKPEYNMVLSDKRADAVAKILVEKYGISQSRVTSNG 334

Query: 168 YGDSVLEVEGTDDVSHARNRRVTATV 193
           YG +   V G    +HA NRR+ A V
Sbjct: 335 YGITKPLVAGNSKEAHAANRRIEAIV 360