Pairwise Alignments

Query, 212 a.a., hypothetical protein from Vibrio cholerae E7946 ATCC 55056

Subject, 196 a.a., OmpA family protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 63.2 bits (152), Expect = 3e-15
 Identities = 49/162 (30%), Positives = 72/162 (44%), Gaps = 21/162 (12%)

Query: 49  QDDDRDGVINARDLCPDTPKGSEIDNDGCGTFVK------SSQMQQLHILFANDSSSIEP 102
           QD D+DGV + +D CP+TP  + +  +GC   V+         +       A+D   IE 
Sbjct: 28  QDTDQDGVPDIKDACPNTPANTSVMANGCVDEVEVTSDNIQCNLNDPSTYSASDCHHIET 87

Query: 103 AF-----------LTQIRQMA---EFLQTYPSTSIELQGYASKVGSAEHNLALSKQRSEA 148
           A            L+Q + +A    FL+    T + L G+   VG+ E N  LS QR++ 
Sbjct: 88  AIVYFEFAIAEVDLSQWKALALVKSFLEANTETKLTLVGHTDIVGTPEFNYQLSLQRAQN 147

Query: 149 VRDQLLR-YGVAPERVNIVGYGDSVLEVEGTDDVSHARNRRV 189
           V+  L+  YG  P R  +VG G S    +         NRRV
Sbjct: 148 VKRILVEDYGFNPNRFTVVGKGISEPVADNRSSEGRGLNRRV 189