Pairwise Alignments

Query, 445 a.a., agglutination protein from Vibrio cholerae E7946 ATCC 55056

Subject, 435 a.a., Type I secretion outer membrane protein, TolC precursor from Pseudomonas fluorescens FW300-N2E2

 Score = 78.2 bits (191), Expect = 5e-19
 Identities = 82/381 (21%), Positives = 161/381 (42%), Gaps = 22/381 (5%)

Query: 42  SNPELKSAFNQFKSREYDAEASSGAYLPKIDLDAGIGYEAINPAESSGNRNTDLTR---- 97
           ++P +  A    +S E    A+ G  LP+++    +         +   R+ DL R    
Sbjct: 35  ADPRVLRAQALVRSGEGKERAAFGQLLPQLNASGSV---------NRSRRDDDLDRIQYN 85

Query: 98  -KDATLTLTQLIWDGSATLNDMDRTAAEAEADRYQLLADASNMALEVAKIYLDATKASEI 156
            K   + L Q+I+D         +    A    Y+ +      ++++++ Y     A + 
Sbjct: 86  GKRMAVMLNQVIYDPQVW-RSYQKYLELARQSGYESVDTRVQASIDLSERYFAVLAAEDE 144

Query: 157 LTLSENNLAIHKDIYRDIKKRADSGIGSTADVTQVEARLAKAHSNLVAAQNNLFDIYTQF 216
           L+L  + L   +   + +K      +    D   +EAR+    ++ + A N +       
Sbjct: 145 LSLVRSELEATERNLKRVKALYARQMAMVTDTLDLEARVDALKADEIEASNKVLASREAI 204

Query: 217 RRLVGQEPVSLEFPRADQNA---IPPTLENA-LNMAQENHPVIKVAQADVDAARFQYKQS 272
             L+G++ VS  F R   N    +P   ++  +  A +++P +   +  V AA     ++
Sbjct: 205 SELLGRD-VSERFKRIGDNPAFILPAQAQDYWVQTALDSNPALHAREHSVLAAEAAIAEN 263

Query: 273 KAPNYPTLSFE--AAQSWRNDAGGIEGSSDELSAMLRLRYNLYNGGSDSDRTESAAYQLN 330
           KA + P L     A +S     G +   SD L A L L+  LY+GGS   R  S+     
Sbjct: 264 KAGHLPRLGLNLTAQRSDIGYEGAVTPRSDNLVASLDLQMPLYSGGSTRARVSSSESDKE 323

Query: 331 RSKDLREKTFRTVEEGLRLSWSALDLTLQQKQFLADHVDSASKTVVSYRKQYQIGQRTLL 390
            ++   E   R V +  R ++  +   L + +     ++SA K+ V+  K +  G +  +
Sbjct: 324 AAQQELEALRRQVIKETRTAYLGMTAELSRIKATRRALESAEKSRVATEKAFGYGVKNAV 383

Query: 391 DLLNTENELFEARKDYLDARY 411
           D+L++  + F AR+D+  ++Y
Sbjct: 384 DVLDSIKDEFRARRDFYQSQY 404



 Score = 32.7 bits (73), Expect = 2e-05
 Identities = 33/129 (25%), Positives = 57/129 (44%), Gaps = 15/129 (11%)

Query: 29  AQTLEQAVSITLASNPELKSAFNQFKSREYDAEASSGAYLPKIDLD-----AGIGYE-AI 82
           AQ  +  V   L SNP L +  +   + E     +   +LP++ L+     + IGYE A+
Sbjct: 229 AQAQDYWVQTALDSNPALHAREHSVLAAEAAIAENKAGHLPRLGLNLTAQRSDIGYEGAV 288

Query: 83  NPAESSGNRNTDLTRKDATLTLTQLIWDGSATLNDMDRTAAEAEADRYQLLADASNMALE 142
            P      R+ +L    A+L L   ++ G +T   +  + ++ EA + +L A    +  E
Sbjct: 289 TP------RSDNLV---ASLDLQMPLYSGGSTRARVSSSESDKEAAQQELEALRRQVIKE 339

Query: 143 VAKIYLDAT 151
               YL  T
Sbjct: 340 TRTAYLGMT 348