Pairwise Alignments

Query, 445 a.a., agglutination protein from Vibrio cholerae E7946 ATCC 55056

Subject, 449 a.a., Type I secretion outer membrane protein, TolC precursor from Pseudomonas fluorescens FW300-N2E2

 Score = 85.1 bits (209), Expect = 4e-21
 Identities = 93/398 (23%), Positives = 168/398 (42%), Gaps = 28/398 (7%)

Query: 31  TLEQAVSITLASNPELKSAFNQFKSREYDAEASSGAYLPKIDLDAGIGYEAINPA--ESS 88
           +L  A   +  ++P ++SA + F++  ++ +   G   P++ L +  GY        +S+
Sbjct: 33  SLTAAYDASRLNDPTVQSAAHAFEASRHEEDIGRGGLYPQVSLTSRYGYGGRTDGGDDST 92

Query: 89  GNRNTDLTRKDATLTLTQLIWDGSATLNDMDRTAAEAEAD-RYQL---LADASNMAL--E 142
              + D    + TL   Q ++D +       R AA  E   R QL   + D +   L   
Sbjct: 93  YVNSNDYQANNVTLAAQQPLYDKA-------RWAAYQEGKARGQLGTQVFDVAGQTLYDR 145

Query: 143 VAKIYLDATKASEILTLSENNLAIHKDIYRDIKKRADSGIGSTADVTQVEARLAKAHSNL 202
           VAK Y D  +A   + L +   A  + +    KK  + G G+  D+ + +ARL    +  
Sbjct: 146 VAKGYFDVARAENEIKLIQQQKAAIQGLVVQSKKLYEGGQGAITDIDEAQARLDLVQAQE 205

Query: 203 VAAQNNLFDIYTQFRRLVGQEPVSLE--FPRADQNA----IPPT--LENALNMAQENHPV 254
             AQ          R L G+  V ++   P  ++ A    IPP   L     +A+E  P 
Sbjct: 206 AEAQARRV---AALRALSGRASVPIDDILPMREELAAGSPIPPEQDLPYWTAIAREASPE 262

Query: 255 IKVAQADVDAARFQYKQSKAPNYPTLSFEAAQSWRNDAG--GIEGSSDELSAMLRLRYNL 312
           +    A V  A  Q    +A +YPTLS     + R       ++   D     ++L   L
Sbjct: 263 LAARLAAVKVAEAQADSQRAGHYPTLSLTTQLTRRETRQYQELDPRQDTYYVGVQLDIPL 322

Query: 313 YNGGSDSDRTESAAYQLNRSKDLREKTFRTVEEGLRLSWSALDLTLQQKQFLADHVDSAS 372
           Y GG+       A  QL  ++   +   + + E +   +  +     + + +   V+S  
Sbjct: 323 YRGGAVRASVAKAEAQLAGAQSDYDVQRQQLAEDIEADYLGVVAGFAKSKAMQRAVESNQ 382

Query: 373 KTVVSYRKQYQIGQRTLLDLLNTENELFEARKDYLDAR 410
           + + S  K +Q G R+ +D+L+ +  LF+AR+D L+ +
Sbjct: 383 RALTSTEKGFQGGVRSTVDILDAQQRLFQARRDLLNTK 420



 Score = 32.3 bits (72), Expect = 3e-05
 Identities = 37/212 (17%), Positives = 76/212 (35%), Gaps = 22/212 (10%)

Query: 21  IALSNPVSA-QTLEQAVSITLASNPELKSAFNQFKSREYDAEASSGAYLPKIDLDAGIG- 78
           +A  +P+   Q L    +I   ++PEL +     K  E  A++    + P + L   +  
Sbjct: 237 LAAGSPIPPEQDLPYWTAIAREASPELAARLAAVKVAEAQADSQRAGHYPTLSLTTQLTR 296

Query: 79  -----YEAINPAESSGNRNTDLTRKDATLTLTQL---IWDGSATLNDMDRTAAEAEADRY 130
                Y+ ++P            R+D      QL   ++ G A    + +  A+    + 
Sbjct: 297 RETRQYQELDP------------RQDTYYVGVQLDIPLYRGGAVRASVAKAEAQLAGAQS 344

Query: 131 QLLADASNMALEVAKIYLDATKASEILTLSENNLAIHKDIYRDIKKRADSGIGSTADVTQ 190
                   +A ++   YL            +  +  ++      +K    G+ ST D+  
Sbjct: 345 DYDVQRQQLAEDIEADYLGVVAGFAKSKAMQRAVESNQRALTSTEKGFQGGVRSTVDILD 404

Query: 191 VEARLAKAHSNLVAAQNNLFDIYTQFRRLVGQ 222
            + RL +A  +L+  + ++   Y       GQ
Sbjct: 405 AQQRLFQARRDLLNTKLDMLQSYVSLHTHTGQ 436