Pairwise Alignments

Query, 445 a.a., agglutination protein from Vibrio cholerae E7946 ATCC 55056

Subject, 491 a.a., Type I secretion outer membrane protein, TolC from Pseudomonas syringae pv. syringae B728a

 Score = 83.6 bits (205), Expect = 1e-20
 Identities = 96/423 (22%), Positives = 174/423 (41%), Gaps = 34/423 (8%)

Query: 42  SNPELKSAFNQFKSREYDAEASSGAYLPKIDLDAGIGYEAINPAESSGNRNTDLTRKDAT 101
           ++  L +A + ++++      +    LP +   A      +   E S +R    T   A 
Sbjct: 67  NDARLSAARHAYRAQREGVPQARAGLLPNLTAGATSEVTRLERDEPSLSRERSGTTFRAN 126

Query: 102 LTLTQLIWDG----SATLNDMDRTAAEAEADRYQLLADASNMALEVAKIYLDATKASEIL 157
           L+      D      A  + +D+   E  A    LL  A+    E  +  LDA  A++  
Sbjct: 127 LSQPLFRIDRWFQLKAAQSSLDQAGLELSAKEQNLLLTAAQAYFETLR-QLDAFAAAQA- 184

Query: 158 TLSENNLAIHKDIYRDIKKRADSGIGSTADVTQVEARLAKAHSNLVAAQNNLFDIYTQFR 217
              E  L   +D     + R + G  S  DV   +A    A +N    Q  + D Y    
Sbjct: 185 --EEAALLRQRD---QAQGRLEDGASSITDVYDAQAAYDNARANRQLVQRKVDDAYEALE 239

Query: 218 RLVGQEPVSLEFPRADQNAIPPTLENA---LNMAQENHPVIKVAQADVDAARFQYKQSKA 274
           RL      S+   R       P   +A   +++A   +  ++ ++  V AA     Q KA
Sbjct: 240 RLTKHSYTSIAGIRHQMPVEAPIPNDARAWVDIALRQNLELQASERAVSAAEQTLNQRKA 299

Query: 275 PNYPTLSFEAAQSWR---NDAGGIEGSSD-----------ELSAMLRLRYNLYNGGSDSD 320
            + PT+  +A  S+R   ND+ G    +D           + S  + L   LY+GG  + 
Sbjct: 300 GHAPTV--DAVASYRKGDNDSFGYSNPTDFGSNGYRDQVAQSSIGIELNIPLYSGGMTNS 357

Query: 321 RTESAAYQLNRSKDLREKTFRTVEEGLRLSWSALDLTLQQKQFLADHVDSASKTVVSYRK 380
           + + +  +L +S+D +E   R V    R ++  ++  ++Q       + S  K+V + + 
Sbjct: 358 QIKESTERLYQSQDEQEDRRRDVVLNTRNAFRGINTGIEQIAARRQSIISGQKSVEANQV 417

Query: 381 QYQIGQRTLLDLLNTENELFEARKDYLDARYAEQYAKYRVMNASGNL----LDALRVDIP 436
              +G R + D+LN + +L+ A +DY DARY       ++  ++G L    L AL + + 
Sbjct: 418 GVDVGSRNIADVLNAQRQLYAAVRDYNDARYDYILDNLKLKQSAGILSPDDLKALALYLK 477

Query: 437 QEW 439
           Q++
Sbjct: 478 QDY 480