Pairwise Alignments

Query, 445 a.a., agglutination protein from Vibrio cholerae E7946 ATCC 55056

Subject, 469 a.a., Type I secretion outer membrane protein, TolC from Pseudomonas syringae pv. syringae B728a

 Score = 73.9 bits (180), Expect = 1e-17
 Identities = 84/379 (22%), Positives = 161/379 (42%), Gaps = 20/379 (5%)

Query: 43  NPELKSAFNQFKSREYDAEASSGAYLPKIDLDAGIGYEAINPAESSGNRNTDLTRKDATL 102
           +P + SA+ + +S       + G  LP++  +    Y  I        +         +L
Sbjct: 53  DPRMLSAYLRAQSAVDSERDAFGGLLPQVTANGS--YNRI--LRKDDTQREIYNNSSYSL 108

Query: 103 TLTQLIWDGSATLNDMDRTAAEAEADRYQLLADASNMALEVAKIYLDATKASEILTL-SE 161
            LTQ +++  A      +  +  E   +Q     +   +++AK Y  A  A + L L   
Sbjct: 109 NLTQYLYNKQAW-EAYQKAKSTTEQKGHQAEDAQAEATVDLAKRYFQALSADDELELIMA 167

Query: 162 NNLAIHKDIYRDIKKRADSGIGSTADVTQVEARLAKAHSNLVAAQNNLFDIYTQFRRLVG 221
              A  K + R +    D  +    D+  ++AR+    +  V A+N +         +VG
Sbjct: 168 ERRATQKSLDR-VSAMYDKKMAVVTDLLDLKARVDLLAAQEVDARNQIRLSRAALSEIVG 226

Query: 222 Q---EPVSLEFPRADQNAIPPTLENALNMAQENHPVIKVAQADVDAARFQYKQSKAPNYP 278
           +   EP+S         A   +++  +  A +++P++K  ++ +D A    ++ K  +YP
Sbjct: 227 RPITEPLSRIRNDIALQAPSKSMDTWVAQAIDSNPLLKARESSLDVANAAVREGKGGHYP 286

Query: 279 TLSFE--AAQSWRNDAGGIEGSSDELSAMLRLRYNLYNGGSDSDRTESA-AYQLNRSKD- 334
           TL+F   A QS       +   SD   A + +R  +Y+GGS S R       QL   +D 
Sbjct: 287 TLTFTLGAQQSDVGYDNTLSPRSDSYVATIGVRVPIYSGGSTSARVRGLYNEQLATEQDV 346

Query: 335 --LREKTFRTVEEGLRLSWSALDLTLQQKQFLADHVDSASKTVVSYRKQYQIGQRTLLDL 392
             +R +  +        ++S+++     K  LA    SA ++ ++ +K +  G    +D+
Sbjct: 347 ESVRRQVVKETTNAYLTAFSSVEKIRANKNALA----SAEQSSIAAQKAFSYGVVNAVDV 402

Query: 393 LNTENELFEARKDYLDARY 411
           L +    F+AR+D L A+Y
Sbjct: 403 LTSVQNEFKARRDLLRAQY 421