Pairwise Alignments

Query, 445 a.a., agglutination protein from Vibrio cholerae E7946 ATCC 55056

Subject, 472 a.a., putative outer membrane efflux protein from Phaeobacter inhibens DSM 17395

 Score =  102 bits (255), Expect = 2e-26
 Identities = 88/331 (26%), Positives = 154/331 (46%), Gaps = 12/331 (3%)

Query: 102 LTLTQLIWD-GSATLNDMDRTAAEAEADRYQLLADASNMALEVA-KIYLDATKASEILTL 159
           L ++ L++D G + LN M   A E      Q L D     L  A + Y++     + ++L
Sbjct: 104 LDVSWLLFDNGVSRLNQM--AAQETVLATRQALIDIEQQVLFAAVQAYVNVLLQQDTVSL 161

Query: 160 SENNLAIHKDIYRDIKKRADSGIGSTADVTQVEARLAKAHSNLVAAQNNLFDIYTQFRRL 219
             NNL + ++  R    R + G  +  DV   E+R+A A ++L+ +Q +L +    + + 
Sbjct: 162 RRNNLRLLREELRAANDRFEVGEVTRTDVALAESRVAGAQASLIESQGDLLNAKATYVQA 221

Query: 220 VGQEPVSLEFPRADQNAIPP---TLENALNMAQENHPVIKVAQADVDAARFQYKQSKAPN 276
           VG+EP ++    A Q  +P    +L++A  +A  NHP +   Q  V AA    + +    
Sbjct: 222 VGREPGTI----AGQPPLPQRVASLQSAEAIAMRNHPSLLTQQHAVKAADLSAQSASRGL 277

Query: 277 YPTLSFEAAQSWRNDAGGIEGSSDELSAMLRLRYNLYNGGSDSDRTESAAYQLNRSKDLR 336
            PT++F A+     D  G  G+SD  SA + L   LY GG+ +    ++  +L   +   
Sbjct: 278 GPTVNFRASVGHGEDPSG-SGTSDTSSASVVLSQRLYAGGAVASARRASIARLQAERGAL 336

Query: 337 EKTFRTVEEGLRLSWSALDLTLQQKQFLADHVDSASKTVVSYRKQYQIGQRTLLDLLNTE 396
             T R+V + +  ++  L+          + V +A       R++  +G RT LD+L  E
Sbjct: 337 ITTQRSVVQDVSEAFVVLEAARASLVSSNEQVRAARVAFDGIREEATLGARTTLDVLEAE 396

Query: 397 NELFEARKDYLDARYAEQYAKYRVMNASGNL 427
            EL  A+   + +R  +  A Y ++ A G L
Sbjct: 397 QELLNAQTARVQSRANQALAAYALLQAQGLL 427



 Score = 54.7 bits (130), Expect = 6e-12
 Identities = 39/183 (21%), Positives = 87/183 (47%), Gaps = 6/183 (3%)

Query: 26  PVSAQTLEQAVSITLASNPELKSAFNQFKSREYDAEASSGAYLPKIDLDAGIGYEAINPA 85
           P    +L+ A +I + ++P L +  +  K+ +  A+++S    P ++  A +G+      
Sbjct: 236 PQRVASLQSAEAIAMRNHPSLLTQQHAVKAADLSAQSASRGLGPTVNFRASVGH----GE 291

Query: 86  ESSGNRNTDLTRKDATLTLTQLIWDGSATLNDMDRTAAEAEADRYQLLADASNMALEVAK 145
           + SG+  +D +   A++ L+Q ++ G A  +    + A  +A+R  L+    ++  +V++
Sbjct: 292 DPSGSGTSDTS--SASVVLSQRLYAGGAVASARRASIARLQAERGALITTQRSVVQDVSE 349

Query: 146 IYLDATKASEILTLSENNLAIHKDIYRDIKKRADSGIGSTADVTQVEARLAKAHSNLVAA 205
            ++    A   L  S   +   +  +  I++ A  G  +T DV + E  L  A +  V +
Sbjct: 350 AFVVLEAARASLVSSNEQVRAARVAFDGIREEATLGARTTLDVLEAEQELLNAQTARVQS 409

Query: 206 QNN 208
           + N
Sbjct: 410 RAN 412