Pairwise Alignments

Query, 445 a.a., agglutination protein from Vibrio cholerae E7946 ATCC 55056

Subject, 448 a.a., outer membrane channel protein (RefSeq) from Shewanella loihica PV-4

 Score = 98.6 bits (244), Expect = 4e-25
 Identities = 98/422 (23%), Positives = 183/422 (43%), Gaps = 20/422 (4%)

Query: 16  AIALAIALSNPVSAQTLEQAVSITLASNPELKSAFNQFKSREYDAEASSGAYLPKIDLDA 75
           A+ LA A ++ V A  L Q     L ++P    A  Q        E +    LP I    
Sbjct: 18  ALTLA-ATTSAVHADDLLQIYQQALTNDPIALQAQAQRDRLYEQIEENRAPLLPTISASV 76

Query: 76  GIGYEAINPAESSGNRNTDLTRKDATLTLTQLIWDGSATLN-DMDRTAAEAEADRYQLLA 134
           G G    N  +   N   D     A ++L Q+I+D SA +  D+   AA      Y   +
Sbjct: 77  GYGKSWTNVDDDKYNSGLD-----AGVSLKQVIYDHSAWVGLDLAELAASQADAAYA--S 129

Query: 135 DASNMALEVAKIYLDATKASEILTLS-ENNLAIHKDIYRDIKKRADSGIGSTADVTQVEA 193
              ++ + V   Y D   A +          AI + +    K+R   G+ +  DV + +A
Sbjct: 130 TLQSLIIRVTGAYFDVLAAKDNYEFKGAEKRAIERQL-EQTKQRFAVGLTAITDVHEAQA 188

Query: 194 RLAKAHSNLVAAQNNLFDIYTQFRRLVGQEPVSLEFPRADQ-NAIPPTL---ENALNMAQ 249
           +   A ++ + A+N L + Y   R + G +  S++     +  A+PPT     + L MA+
Sbjct: 189 QYDLARASEILAENQLINSYEALREITGIDHKSIDILDTTRFTAVPPTPAMPNDWLKMAE 248

Query: 250 ENHPVIKVAQADVDAARFQYKQSKAPNYPTLSFEAAQSW----RNDAGGIEGSSDELSAM 305
            +   +   +   D A+      KA + P+LS  A  +     +N AG +    D  +  
Sbjct: 249 TSSVDLLTTRIGKDIAQQTISLYKAGHMPSLSLNAGYTTNLNQKNQAGDLS-DYDNANVG 307

Query: 306 LRLRYNLYNGGSDSDRTESAAYQLNRSKDLREKTFRTVEEGLRLSWSALDLTLQQKQFLA 365
           L L   ++ G   S +   A YQ   + +  E+T+R V + +R +++ +  ++   +   
Sbjct: 308 LTLSVPIFEGFKVSSKVNQAQYQYVEASEKMEQTYRKVVKDVRNNFNNVGASISSIRAYE 367

Query: 366 DHVDSASKTVVSYRKQYQIGQRTLLDLLNTENELFEARKDYLDARYAEQYAKYRVMNASG 425
             V S+   + + +  +++G RT++D+LN   +L+++++   +ARY    +   +  A+G
Sbjct: 368 QSVISSESALKATQAGFEVGTRTIVDVLNRTRDLYDSKRQLSNARYGYINSILALKQATG 427

Query: 426 NL 427
            L
Sbjct: 428 TL 429