Pairwise Alignments

Query, 445 a.a., agglutination protein from Vibrio cholerae E7946 ATCC 55056

Subject, 470 a.a., TolC family type I secretion outer membrane protein (RefSeq) from Shewanella loihica PV-4

 Score =  377 bits (969), Expect = e-109
 Identities = 192/457 (42%), Positives = 302/457 (66%), Gaps = 25/457 (5%)

Query: 14  LKAIALAIALS-----NPVSAQTLEQAVSITLASNPELKSAFNQFKSREYDAEASSGAYL 68
           LK  A+A+A+S        S+QTLEQAV+ TL +NP+++ AFN+FK+RE     +   Y+
Sbjct: 9   LKRSAMALAISAMLIPGAASSQTLEQAVAHTLDTNPDIRIAFNRFKAREEQVNQAIAGYM 68

Query: 69  PKIDLDAGIGYEAINPAES---SGNRNTD------LTRKDATLTLTQLIWDGSATLNDMD 119
           P +D+  G G+E  N   +   +G  + D      L R +   ++ Q+++DG  T +++D
Sbjct: 69  PTVDISGGYGWEQTNSPSTRRRAGQGDVDKDGVIELMRGEVGFSIKQMLFDGFYTSSEVD 128

Query: 120 RTAAEAEADRYQLLADASNMALEVAKIYLDATKASEILTLSENNLAIHKDIYRDIKKRAD 179
           R + EA AD++ L A A ++AL+VAK+Y++  ++ ++LTL+E NL  HKDIY  IK+R D
Sbjct: 129 RFSFEASADQWALFAAAEDIALDVAKVYVNYIRSEQVLTLAEKNLQSHKDIYDQIKQRTD 188

Query: 180 SGIGSTADVTQVEARLAKAHSNLVAAQNNLFDIYTQFRRLVGQEPVSLEFPRADQNAIPP 239
           SG+GS AD++Q+  RLA+A++N++AA+NN FD   QF R+V +EP +L  P  D + +P 
Sbjct: 189 SGLGSVADLSQITGRLARANANVIAAKNNFFDAKAQFIRIVEKEPENLIVPVPDDDMLPT 248

Query: 240 TLENALNMAQENHPVIKVAQADVDAARFQYKQSKAPNYPTLSFEAAQSWRNDAGG----- 294
            L + L +AQENHP++K A +D+ AA  +   +++  YP LS E   +W ++  G     
Sbjct: 249 NLTDGLKVAQENHPILKSAASDISAAENERSSAQSNYYPKLSLELGGNWNDNLDGEDGYS 308

Query: 295 ------IEGSSDELSAMLRLRYNLYNGGSDSDRTESAAYQLNRSKDLREKTFRTVEEGLR 348
                 + G +++L AM+R++YNL+ GG D  R + AAY++  +K++R++ +R V EG+ 
Sbjct: 309 AFASQNVGGHNNDLIAMVRVKYNLFAGGKDLAREKEAAYKIGEAKEIRQRAYRQVVEGVN 368

Query: 349 LSWSALDLTLQQKQFLADHVDSASKTVVSYRKQYQIGQRTLLDLLNTENELFEARKDYLD 408
           L+W+A ++   QK ++ DHV +A  T V+Y +Q+ +GQRTLLDLL+TENELFEARKDYLD
Sbjct: 369 LAWNAYEMLEPQKLYIRDHVIAAKDTQVAYSQQFNLGQRTLLDLLDTENELFEARKDYLD 428

Query: 409 ARYAEQYAKYRVMNASGNLLDALRVDIPQEWTAKVEY 445
           A Y E  ++YR++NA+G LL++LRV  P+ W  + EY
Sbjct: 429 AEYDEIISEYRILNATGRLLESLRVTRPEVWKGEREY 465