Pairwise Alignments

Query, 445 a.a., agglutination protein from Vibrio cholerae E7946 ATCC 55056

Subject, 435 a.a., outer membrane protein TolC (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 97.1 bits (240), Expect = 1e-24
 Identities = 97/420 (23%), Positives = 190/420 (45%), Gaps = 18/420 (4%)

Query: 17  IALAIALS-NPVSAQTLEQAVSITLASNPELKSAFNQFKSREYDAEASSGAYLPKIDLDA 75
           +AL +A S + V A  L Q     L ++P +  A  Q  +     E +    LP I   A
Sbjct: 10  VALTLAASAHAVQADDLLQIYQQALTNDPLVLQAQAQRNALFEKIEQNRAPLLPTIS--A 67

Query: 76  GIGYEAINPAESSGNRNTDLTRKDATLTLTQLIWDGSATLNDMDRTAAEAEADRYQLLAD 135
            +GY+     ++  +   D +    +L L Q+I+D SA +       A ++AD     A 
Sbjct: 68  NVGYD-----KAWNDPRDDSSGLTGSLKLNQVIYDHSAWVGLSLAEKAASQADSTYASA- 121

Query: 136 ASNMALEVAKIYLDATKASEILTLS-ENNLAIHKDIYRDIKKRADSGIGSTADVTQVEAR 194
             N+   V K Y D   A +          AI + +    K+R   G+ +  DV + +A+
Sbjct: 122 LQNLISRVTKAYFDVLTAKDNYEFQGAEKRAIERQL-EQTKQRFAVGLTAITDVHEAQAQ 180

Query: 195 LAKAHSNLVAAQNNLFDIYTQFRRLVGQEPVSLEFPRADQ-NAIPPTLENA---LNMAQE 250
              A ++ + A+N L + Y   R + G +  +L     ++ +A+ P   ++   L +A+ 
Sbjct: 181 YDLASASEILAENTLANSYEALREITGIDHKALNVLDTNRFSAVTPAPSSSTDWLKIAET 240

Query: 251 NHPVIKVAQADVDAARFQYKQSKAPNYPTLSFEA--AQSWRNDAGGI-EGSSDELSAMLR 307
           N   +   +   D A+      KA + P+LS  A  A+      G   E   D +S  + 
Sbjct: 241 NSVDLMTQRIGKDIAQETISLYKAGHMPSLSLNAGYAKGLEQKLGDASEPDFDNMSVGIN 300

Query: 308 LRYNLYNGGSDSDRTESAAYQLNRSKDLREKTFRTVEEGLRLSWSALDLTLQQKQFLADH 367
           L   ++ G   S + + A +Q  ++ +  E+T+R V + +R +++ +  ++   +     
Sbjct: 301 LSVPIFEGFKVSSQVKEAQFQYVQASERLEQTYRGVVKNVRNNYNNVGASISSIRAYEQS 360

Query: 368 VDSASKTVVSYRKQYQIGQRTLLDLLNTENELFEARKDYLDARYAEQYAKYRVMNASGNL 427
           V S+   + + +  +++G RT++D+LN   +L+++++   DARY+   +   +  A+G L
Sbjct: 361 VISSESALKATQAGFEVGTRTIVDVLNRTRDLYDSKRKLSDARYSYINSIVALKQAAGTL 420