Pairwise Alignments

Query, 445 a.a., agglutination protein from Vibrio cholerae E7946 ATCC 55056

Subject, 435 a.a., outer membrane channel protein (RefSeq) from Shewanella sp. ANA-3

 Score = 94.7 bits (234), Expect = 5e-24
 Identities = 94/419 (22%), Positives = 188/419 (44%), Gaps = 18/419 (4%)

Query: 18  ALAIALS-NPVSAQTLEQAVSITLASNPELKSAFNQFKSREYDAEASSGAYLPKIDLDAG 76
           AL +A S   V A  L Q     L S+P +  A  Q  +     E +    LP I   A 
Sbjct: 11  ALTLAASAQAVQADDLLQIYQQALTSDPLVLQAQAQRNALFEKIEQNRAPLLPTIS--AN 68

Query: 77  IGYEAINPAESSGNRNTDLTRKDATLTLTQLIWDGSATLNDMDRTAAEAEADRYQLLADA 136
           +GY+     ++  +  +D +    +L L Q+I+D SA +       A ++AD     A  
Sbjct: 69  VGYD-----KAWNDPKSDTSGLTGSLKLNQVIYDHSAWVGLSLAEKAASQADSTYASA-L 122

Query: 137 SNMALEVAKIYLDATKASEILTLS-ENNLAIHKDIYRDIKKRADSGIGSTADVTQVEARL 195
            N+   V K Y D   A +          AI + +    K+R   G+ +  DV + +A+ 
Sbjct: 123 QNLITRVTKAYFDVLTAKDNYEFQGAEKRAIERQL-EQTKQRFAVGLTAITDVHEAQAQY 181

Query: 196 AKAHSNLVAAQNNLFDIYTQFRRLVGQEPVSLEFPRADQ-NAIPPTLENA---LNMAQEN 251
             A +  + A+N L + Y   R + G +  ++     ++ +A+ P   ++   L +A+ N
Sbjct: 182 DLASATEILAENTLANSYEALREITGIDHKTINVLDTNRFSAVTPAPTSSSEWLKIAETN 241

Query: 252 HPVIKVAQADVDAARFQYKQSKAPNYPTLSFEAA--QSWRNDAGGI-EGSSDELSAMLRL 308
              +   +   D A+      KA + P+LS  A   +      G + E   D ++  + L
Sbjct: 242 SVDLMTQRIGKDIAQETISLYKAGHMPSLSLNAGYNKGLEQKTGDVNEPDFDNVNVGVNL 301

Query: 309 RYNLYNGGSDSDRTESAAYQLNRSKDLREKTFRTVEEGLRLSWSALDLTLQQKQFLADHV 368
              ++ G   + + + A +Q   + +  E+T+R+V + +R +++ +  ++   +     V
Sbjct: 302 SIPIFEGFKVTSQVKEAQFQYVEASEKLEQTYRSVVKNVRNNYNNVGASISSIRAYEQSV 361

Query: 369 DSASKTVVSYRKQYQIGQRTLLDLLNTENELFEARKDYLDARYAEQYAKYRVMNASGNL 427
            S+   + + +  +++G RT++D+LN   +L+++++   DARY+   +   +  A+G L
Sbjct: 362 ISSESALKATQAGFEVGTRTIVDVLNRTRDLYDSKRKLSDARYSYINSIIALKQAAGTL 420