Pairwise Alignments

Query, 405 a.a., MFS transporter from Vibrio cholerae E7946 ATCC 55056

Subject, 421 a.a., Arabinose efflux permease from Pseudomonas stutzeri RCH2

 Score =  227 bits (579), Expect = 4e-64
 Identities = 130/386 (33%), Positives = 209/386 (54%)

Query: 3   ELHSPQYLKVTFALAFGSFLVFCNLYLFQPMLPYLANHFAVSETQINWLFAASTLALSLC 62
           E  +P++ +   AL  G F  F  LY  QPM+P L+  F ++  Q + + + STL L++ 
Sbjct: 25  EKGTPRFARTALALFAGGFATFALLYCVQPMMPMLSQAFGINAAQSSLILSLSTLTLAVG 84

Query: 63  LVPWAVTSEAVGRRLVMLTGLFAMPVIGLAMLYAEQFWFLVLTRALMGVALAAFASVAVA 122
           L+     S+A+GR+ V++  L A  V  +    A  +  ++L RAL+G+AL+  A+VA+ 
Sbjct: 85  LLITGPISDAIGRKQVLVVSLLAAAVFTVGSALAPSWHGVLLMRALVGLALSGVAAVAMT 144

Query: 123 YMVEELSPQAFGKAIGGYIAANSLGGITGRIAGGLLTDALGWQHAVVAMAIFTLLGALLV 182
           Y+ EE+ P   G A+G YI  N++GG++GR+  G+L D L W   +  M    LL ALL+
Sbjct: 145 YLSEEIHPHHLGLAMGLYIGGNAIGGMSGRLLSGVLVDYLSWHSVLGLMGGLALLAALLL 204

Query: 183 AYLLPIQQHFKPQRGLFFHHNRALVKHLQNRTLWLAMLIGGVNFALFVNLYSVMGFRLVA 242
              LP  +HF+P+        +    H ++  L    L G +    FV LY+ +G+RL+A
Sbjct: 205 WRFLPESRHFRPRPLRLQGLLQGYSLHFRDAGLPWLFLQGFLLMGSFVTLYNYIGYRLIA 264

Query: 243 EPYSLPIGIASLIFVCYLAGTLSSKLTANWNRRFSAIPGMMLGALISMAGMLIALIEAIP 302
           EP+ L   +  L+ V YL+G  SS        RF       L   + +AG+ + L + +P
Sbjct: 265 EPFHLSQTMIGLLAVLYLSGIYSSAQVGALADRFGRRRVFWLVIALMLAGVGLTLFDRLP 324

Query: 303 AMLVGLILISFGAFFTHTLAYAWVSQKATQAKATATALYLVHYYIGGSLGGFYLLYCWQH 362
            +L+G++L +FG F  H++A +W+ ++A QA+  A++LYL  YY+G S+ G      W  
Sbjct: 325 LVLLGMLLFTFGFFGAHSVASSWIGRRARQARGQASSLYLFSYYLGSSIAGTLGGVFWHA 384

Query: 363 GGWEMVTLGGLGLYFILFILGWRLSR 388
            GW+ V L    L  I F +   L+R
Sbjct: 385 AGWDGVGLFIASLLLIAFAVALHLAR 410



 Score = 35.0 bits (79), Expect = 4e-06
 Identities = 41/180 (22%), Positives = 75/180 (41%), Gaps = 7/180 (3%)

Query: 16  LAFGSFLVFCNLYLFQPMLPYLANHFAVSETQINWLFAASTLALSLCLVPWAVTSEAVGR 75
           L  GSF+   N   ++     +A  F +S+T I  L A   L+           ++  GR
Sbjct: 246 LLMGSFVTLYNYIGYR----LIAEPFHLSQTMIG-LLAVLYLSGIYSSAQVGALADRFGR 300

Query: 76  RLVMLTGLFAMPVIGLAMLYAEQFWFLVLTRALMGVALAAFASVAVAYMVEELSPQAFGK 135
           R V    + A+ + G+ +   ++   ++L   L         SVA ++ +   + QA G+
Sbjct: 301 RRVFWL-VIALMLAGVGLTLFDRLPLVLLGMLLFTFGFFGAHSVASSW-IGRRARQARGQ 358

Query: 136 AIGGYIAANSLGGITGRIAGGLLTDALGWQHAVVAMAIFTLLGALLVAYLLPIQQHFKPQ 195
           A   Y+ +  LG       GG+   A GW    + +A   L+   +  +L  ++   +PQ
Sbjct: 359 ASSLYLFSYYLGSSIAGTLGGVFWHAAGWDGVGLFIASLLLIAFAVALHLARLRPLPEPQ 418