Pairwise Alignments

Query, 405 a.a., MFS transporter from Vibrio cholerae E7946 ATCC 55056

Subject, 392 a.a., Arabinose efflux permease from Pseudomonas stutzeri RCH2

 Score =  233 bits (594), Expect = 7e-66
 Identities = 140/381 (36%), Positives = 206/381 (54%), Gaps = 5/381 (1%)

Query: 6   SPQYLKVTFALAFGSFLVFCNLYLFQPMLPYLANHFAVSETQINWLFAASTLALSLCLVP 65
           +P Y + T AL    F  F  LY  QP+LP LA HF+VS    +   + +TL+L+LCL+ 
Sbjct: 12  TPAYRRATLALFCAGFATFALLYCIQPLLPMLAAHFSVSAASSSLALSLTTLSLALCLLI 71

Query: 66  WAVTSEAVGRRLVMLTGLFAMPVIGLAMLYAEQFWFLVLTRALMGVALAAFASVAVAYMV 125
               +E+ GR+ VM   L    ++GLA +  + +  L+  RAL+G+AL+   ++A+AY+ 
Sbjct: 72  SGALAESWGRKPVMAAALGLASLLGLASVLVDSWQLLLALRALLGLALSGLPALAMAYVG 131

Query: 126 EELSPQAFGKAIGGYIAANSLGGITGRIAGGLLTDALGWQHAVVAMAIFTLLGALLVAYL 185
           EE  PQ+   A+G YI   +LGG+ GR+  GLL+D  GWQ A+  +A   LL   L  +L
Sbjct: 132 EEFEPQSLPAAMGLYIGGTALGGMLGRLLSGLLSDLGGWQLALGGIASLGLLALALFVWL 191

Query: 186 LPIQQHFKPQRGLFFHHNRALVKHLQNRTLWLAMLIGGVNFALFVNLYSVMGFRLVAEPY 245
           LP  +HFK Q     +       HL+N TL    L G +    FV L++ +GFRL  EP+
Sbjct: 192 LPASRHFKAQPLSLRNLLANFRLHLRNPTLRSLFLQGFLLMGGFVALFNYIGFRLAGEPF 251

Query: 246 SLPIGIASLIFVCYLAGTLSSKLTANWNRRFSAIPGMMLGALISMAGMLIALIEAIPAML 305
            L   +  L+FV YL G  S+        RF A   +  G ++ + G+ +     + A++
Sbjct: 252 GLSSTLIGLLFVVYLGGIFSAGWAGRLVPRFGARQVLRGGVVLMLLGVGLCATPWLAAIV 311

Query: 306 VGLILISFGAFFTHTLAYAWVSQKATQAKATATALYLVHYYIGGSLGGFYLLYCWQHGGW 365
           +GL L + G F  H +A   V   A QA+A A+ALYL  YY+G S+ G+   Y W H GW
Sbjct: 312 LGLGLFTLGFFAAHAVASGQVGSHAKQARAQASALYLCAYYLGSSVVGYGAGYVWDHAGW 371

Query: 366 EMVTLGGLGLYFILFIL-GWR 385
               L  + L   LF++ GWR
Sbjct: 372 ----LPLMALLAALFVIAGWR 388