Pairwise Alignments

Query, 405 a.a., MFS transporter from Vibrio cholerae E7946 ATCC 55056

Subject, 391 a.a., putative permease (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score = 96.7 bits (239), Expect = 1e-24
 Identities = 71/360 (19%), Positives = 153/360 (42%), Gaps = 6/360 (1%)

Query: 12  VTFALAFGSFLVFCNLYLFQPMLPYLANHFAVSETQINWLFAASTLALSLCLVPWAVTSE 71
           + + LA  + +   N+Y  QP+L  + +   +SE + N +   + +  +  L+      +
Sbjct: 15  ILWTLAIVAGVSVANIYYIQPLLNMIRHELGISEFRTNLIAMVTQIGYAAGLLFITPLGD 74

Query: 72  AVGRRLVMLTGLFAMPVIGLAMLYAEQFWFLVLTRALMGVALAAFASVAVAYMVEELSPQ 131
              R+ ++L   F +    L +  A+    ++L     G A +    + +    +   P+
Sbjct: 75  LYQRKKIILVNFFVLIFSLLTIALADNIHLILLASFFTG-ACSMIPQIFIPIAAQFSRPE 133

Query: 132 AFGKAIGGYIAANSLGGITGRIAGGLLTDALGWQHAVVAMAIFTLLGALLVAYLLP-IQQ 190
             G+ +G  ++    G +  R+  G + +  GW+      A    + A++V  +LP IQ 
Sbjct: 134 NKGRNVGIVLSGLLTGILASRVVSGFVGELFGWREMYYIAAAMMFVCAIVVLKVLPDIQT 193

Query: 191 HFKPQRGLFFHHNRALVKHLQNRTLWLAMLIGGVNFALFVNLYSVMGFRLVAEPYSLPIG 250
           +F+ + G       ALVK      ++   +   +NF   + ++S + F++   P+     
Sbjct: 194 NFRGKYGDLMKSLLALVKEFPQLRIY--SIRAALNFGSLLAMWSCLAFKMGQAPFHANSD 251

Query: 251 IASLIFVCYLAGTLSSKLTANWNRRFSAIPGMMLGALISMAGMLIALI--EAIPAMLVGL 308
           I  L+ +C +AG L++     + +R        +G  + +   L+  +       +++G+
Sbjct: 252 IIGLLGLCGVAGALTASFVGKYVKRVGVRRFNFIGCGLILFSWLLFFVGENTYLGIILGI 311

Query: 309 ILISFGAFFTHTLAYAWVSQKATQAKATATALYLVHYYIGGSLGGFYLLYCWQHGGWEMV 368
           I+I  G           + + + +A      +++  Y++GGSLG F     WQ  GW  V
Sbjct: 312 IIIDIGMQCIQLSNQTSIFELSPRASNRINTIFMTTYFVGGSLGTFLAGTFWQLYGWHGV 371



 Score = 35.4 bits (80), Expect = 3e-06
 Identities = 40/176 (22%), Positives = 63/176 (35%), Gaps = 23/176 (13%)

Query: 15  ALAFGSFLVFCNLYLFQP-MLPYLANHFAVSETQINWLFAASTLALSLCLVPWAVTSEAV 73
           AL FGS L   +   F+    P+ AN   +               L LC V  A+T+  V
Sbjct: 224 ALNFGSLLAMWSCLAFKMGQAPFHANSDIIG-------------LLGLCGVAGALTASFV 270

Query: 74  GRRLVMLTGLFAMPVIGLAMLYAEQFWFLVLTRALMGVALAAFA--------SVAVAYMV 125
           G+  V   G+     IG  ++      F V     +G+ L             ++    +
Sbjct: 271 GK-YVKRVGVRRFNFIGCGLILFSWLLFFVGENTYLGIILGIIIIDIGMQCIQLSNQTSI 329

Query: 126 EELSPQAFGKAIGGYIAANSLGGITGRIAGGLLTDALGWQHAVVAMAIFTLLGALL 181
            ELSP+A  +    ++    +GG  G    G      GW   +   A  T +  L+
Sbjct: 330 FELSPRASNRINTIFMTTYFVGGSLGTFLAGTFWQLYGWHGVIGIGATLTCISLLI 385