Pairwise Alignments

Query, 362 a.a., ribosomal RNA large subunit methyltransferase F from Vibrio cholerae E7946 ATCC 55056

Subject, 398 a.a., putative SAM-dependent methyltransferase (RefSeq) from Shewanella loihica PV-4

 Score =  365 bits (936), Expect = e-105
 Identities = 186/369 (50%), Positives = 242/369 (65%), Gaps = 20/369 (5%)

Query: 6   KPKHGQKTNRKPKA---NKPVVKKQQTKQPPTHKVQGEEVAAVKSGLHPRNRHRGQYDFP 62
           KP    K+  +PKA   +KP  K Q   Q  +  V+G+   A K GLHPRN H   YDF 
Sbjct: 28  KPSSQSKSKAQPKAKPESKPQAKSQAKPQAKSKPVEGKSQGASK-GLHPRNLHGQGYDFD 86

Query: 63  ALIKVVPELQSHVMKNPKGQWTINFADPISVKLLNKALLVLHYGVTYWDIPEGFLCPPIP 122
           AL+   PEL+  V  NP G  +I+FADP +VKLLN ALL LHYG++YWDIPEGFLCPPIP
Sbjct: 87  ALMDTTPELKPFVRPNPYGNLSIDFADPRAVKLLNLALLRLHYGLSYWDIPEGFLCPPIP 146

Query: 123 GRADYIHRVADLLLKGNPQL--------------NHSQVRALDIGVGANCIYPIVGVTEY 168
           GR DY+H +ADLL +  P                   +V ALDIG GAN IYP++G   Y
Sbjct: 147 GRVDYLHYLADLLAESTPASKGGKRKLPNVTRAPKGERVVALDIGTGANGIYPLLGHQVY 206

Query: 169 GWSWVGSDVDPVSIQQASLIVQSNSKLQGHIECRLQKNSQHIFNGIIGANERYTVTTCNP 228
           GW +V SD+DPVS++    I+ +N +L G +  RLQ +S+ IF GII A +R+ +T CNP
Sbjct: 207 GWRFVASDIDPVSLKNVERIIANNPQLAGKLSLRLQSDSKQIFTGIIRAEDRFDLTLCNP 266

Query: 229 PFHASLADAQQGTQRKLTNLQANQRKKGRLATPTLSHSRLNFGGQKAELWCPGGEAAFIG 288
           PFHASLA+A +G++RKL NL AN+R KG       S  +LNFGGQKAELWC GGE AF+G
Sbjct: 267 PFHASLAEASRGSERKLKNLAANKRAKGHEVAK--SKEKLNFGGQKAELWCEGGEQAFLG 324

Query: 289 KMAVESQQFAQQVLWFRTLISKGDNVRGMKKQLEKLGAQSIHVIEMAQGQKISRFIAWSF 348
           +M  ESQ+F  Q LWF +L+SK +N++   + LE++GA+ +  +EMAQG K++R +AW+F
Sbjct: 325 QMIRESQKFGSQCLWFTSLVSKKENLKPCYRLLEQVGAKRVETLEMAQGNKLTRVLAWTF 384

Query: 349 QNAEQRKLW 357
              EQ  LW
Sbjct: 385 LTPEQHSLW 393