Pairwise Alignments

Query, 362 a.a., ribosomal RNA large subunit methyltransferase F from Vibrio cholerae E7946 ATCC 55056

Subject, 307 a.a., conserved hypothetical protein (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  296 bits (758), Expect = 5e-85
 Identities = 150/314 (47%), Positives = 201/314 (64%), Gaps = 19/314 (6%)

Query: 44  AVKSGLHPRNRHRGQYDFPALIKVVPELQSHVMKNPKGQWTINFADPISVKLLNKALLVL 103
           A +S LH RN+H GQYDF  L +  P L+  V+ NP G  TI+F +P +VK LNKALL+ 
Sbjct: 2   AERSELHTRNKHNGQYDFSLLTENYPPLRKFVLLNPLGIQTIDFFNPHAVKALNKALLIS 61

Query: 104 HYGVTYWDIPEGFLCPPIPGRADYIHRVADLL---------LKGNPQLNHSQVRALDIGV 154
           +YG+ YWDIP  +LCPPIPGRADY+H +ADL+          + N      Q R LDIGV
Sbjct: 62  YYGIRYWDIPRNYLCPPIPGRADYVHYIADLIDPERVSNTANEENGDKPKRQCRCLDIGV 121

Query: 155 GANCIYPIVGVTEYGWSWVGSDVDPVSIQQASLIVQSNSKLQGHIECRLQKNSQHIFNGI 214
           GANCIYPI+G  EYGW +VGSD+DPVSI+ A  IV  N  L   I+ RLQK+++ IF+GI
Sbjct: 122 GANCIYPIIGHVEYGWMFVGSDIDPVSIENARKIVTCNPVLAHKIDLRLQKDNRRIFDGI 181

Query: 215 IGANERYTVTTCNPPFHASLADAQQGTQRKLTNLQANQRKKGRLATPTLSHSRLNFGGQK 274
           I  +E + VT CNPPFH+S  +A++GT RKL++L+  + KK          ++LNFGG  
Sbjct: 182 IAPDEYFDVTICNPPFHSSKKEAEEGTLRKLSSLKGEKVKK----------TKLNFGGNA 231

Query: 275 AELWCPGGEAAFIGKMAVESQQFAQQVLWFRTLISKGDNVRGMKKQLEKLGAQSIHVIEM 334
            ELWC GGE  F+  M  ES+++ +   WF +L+SK  N+  +  +L+ +      +I M
Sbjct: 232 NELWCEGGELRFLLNMISESRKYRKNCGWFTSLVSKEKNLDKLYAKLKAVHVSEYKIIRM 291

Query: 335 AQGQKISRFIAWSF 348
            QG K SR +AW F
Sbjct: 292 CQGTKNSRILAWRF 305