Pairwise Alignments

Query, 382 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 375 a.a., ABC-type multidrug transport system, permease component from Pseudomonas stutzeri RCH2

 Score = 58.5 bits (140), Expect = 3e-13
 Identities = 88/395 (22%), Positives = 165/395 (41%), Gaps = 57/395 (14%)

Query: 3   LFELFKAELKALFTNPVVVLTVFGGVVFYSFLYPL----PYAKQIPREQTVSVVNLDQSQ 58
           +F+L   EL++L+ +P +++     ++ YSF   +        + P   +++VV+ D+SQ
Sbjct: 11  IFQLGLKELRSLYRDPAMLV-----LIIYSFTLAIYEGATAIPEAPHRASIAVVDEDRSQ 65

Query: 59  AS------FQLERMVDATPQVKIVQRDHTIADAKQAFLDKKVAGILVIPEHFYKDLLLGK 112
           AS      FQL   ++    + + + D  + D    F        L IP  F +DLL G+
Sbjct: 66  ASLRIINAFQLPYFIEPKA-ITLQKMDSGMDDGLYTFT-------LNIPPRFQQDLLAGR 117

Query: 113 SPTLAYAGDASYFLVYGTIVEGLAQAGGTLAAQTKVSRLVIEGEPMAFAAQHFS----PT 168
            PT+    DA+       + +    AG          + +I  E   F  ++ S    P 
Sbjct: 118 QPTIQLNVDATQ------VSQAFTGAGHI--------QQIIASETAEFVRRYRSSDALPV 163

Query: 169 SANLKPTFNPRMGYVDY-VVPAVFVLILQQTLIMAAGLMVGTQKQG---HGYWSRVAPAK 224
            A ++  FNP +    +  V  V   I    +I+    ++  ++ G   H     V P +
Sbjct: 164 EAVVRTAFNPNLSRAWFGAVNEVINQITMLAIILTGAALIREREHGTIEHLLVMPVTPFE 223

Query: 225 LLLVRSFVLVAVYYLLSLYYFGASFDLHGVNTLAKPNDLISLL---LPFLLACNFVGIAL 281
           +++ + + +  V  +L+   F   F + G   +     L          L A   +GI  
Sbjct: 224 IMVGKVWAMGLV--VLAAAAFALRFVVEGWLNIPIQGSLWLFAGGAALHLFAATSMGIFF 281

Query: 282 GAVTPRRELVTLVVLISSMPLIFTAGFIWPLEMIPAPLVWLAQCFPSTPAIQGFLGLNQM 341
           G V      + L+V+++ +PL   +G + P E +P  +  +    P+T  ++    +   
Sbjct: 282 GTVARSMPQLGLLVILTLIPLQILSGGVTPRESMPELVQNIMLVAPTTHFVELAQAILFR 341

Query: 342 AASWSTIAPKWTLLWAQALVWGGLAFYL--LRRVR 374
           +A  S +   W  L A A++  G  F+L  L R+R
Sbjct: 342 SAGPSIV---WPQLLALAVI--GTVFFLGALSRLR 371