Pairwise Alignments

Query, 382 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 375 a.a., ABC transporter, permease protein, putative (RefSeq) from Shewanella amazonensis SB2B

 Score = 74.3 bits (181), Expect = 5e-18
 Identities = 75/317 (23%), Positives = 135/317 (42%), Gaps = 22/317 (6%)

Query: 18  PVVVLTVFGGVVFYSFLYPLPYAKQIPREQTVSVVNLDQSQASFQLERMVDATPQVKIVQ 77
           P+V L +FG  +          A+ +P      +V++  +     L + V AT  V  ++
Sbjct: 30  PLVQLMLFGYAINTD-------ARHLP----AGLVDMSGNSQGRALVQAVSATQVVDFIE 78

Query: 78  RDHTIADAKQAFLDKKVAGILVIPEHFYKDLLLGKSPTLAYAGDASYFLVYGTIVEGLAQ 137
              +IA A++A     V   LVIP  F   L+   S   A  G  +YF     + + L  
Sbjct: 79  SYQSIAQAEEAITAGHVKAALVIPADFGSRLI---SHPQAQTGQGAYFS--RPVAQWLVD 133

Query: 138 AGGTLAAQT-KVSRLVIEGEPMAFAAQHFSPTSANLKPTFNPRMGYVDYVVPAVFVLILQ 196
              T+ A T K  R +   E +       S  +  +   FNP    V  +VP +  +IL 
Sbjct: 134 GSDTVVASTIKSLRTMPLSEVLGLPVPE-STATMEVVMYFNPEQRTVVNIVPGLLGVILT 192

Query: 197 QTLIM-AAGLMVGTQKQGHGYW---SRVAPAKLLLVRSFVLVAVYYLLSLYYFGASFDLH 252
            T+++  +  +V  ++QG+  +   + V P +L+L +    V V ++      GA   L 
Sbjct: 193 MTMVLFTSAAIVREREQGNMEFLITTPVKPLELMLGKILPYVLVGFVQVAIILGAGKLLF 252

Query: 253 GVNTLAKPNDLISLLLPFLLACNFVGIALGAVTPRRELVTLVVLISSMPLIFTAGFIWPL 312
            +        L    + F+LA   +G+ +  +   +     + +   +P I  +GF++P 
Sbjct: 253 ALPIRGGLESLALAAMLFILASLTLGLVISTIARTQLQAMQMTVFILLPSILLSGFMFPY 312

Query: 313 EMIPAPLVWLAQCFPST 329
           E +P P  W+A+  P+T
Sbjct: 313 EAMPVPAQWIAEALPAT 329