Pairwise Alignments

Query, 382 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 386 a.a., hypothetical protein (RefSeq) from Shewanella amazonensis SB2B

 Score =  303 bits (775), Expect = 7e-87
 Identities = 156/376 (41%), Positives = 229/376 (60%), Gaps = 1/376 (0%)

Query: 1   MTLFELFKAELKALFTNPVVVLTVFGGVVFYSFLYPLPYAKQIPREQTVSVVNLDQSQAS 60
           MTL  L   ELKA+  +  + +T+FGGV+FY+ LYPLPY  Q+P EQ + VV+LD +  S
Sbjct: 1   MTLLRLILEELKAIVADKAIAVTLFGGVLFYALLYPLPYLNQVPTEQALVVVDLDNTSLS 60

Query: 61  FQLERMVDATPQVKIVQRDHTIADAKQAFLDKKVAGILVIPEHFYKDLLLGKSPTLAYAG 120
            +L R  DA+P++++ +   ++A+A+         G+LVIP  F +DLLLGK  TL+Y G
Sbjct: 61  RELIRHADASPKIRVARAAGSVAEAQHYIASGDFHGLLVIPAGFKRDLLLGKGATLSYGG 120

Query: 121 DASYFLVYGTIVEGLAQAGGTLAAQTKVSRLVIEGEPMAFAAQHFSPTSANLKPTFNPRM 180
           DASYFLVY  +VEGL  AG   A   ++  ++  GE  A A+    P   N  P +NP +
Sbjct: 121 DASYFLVYSALVEGLVTAGMDAARSVQLLGMLSRGESFAGASLSLLPMHLNAVPAYNPGL 180

Query: 181 GYVDYVVPAVFVLILQQTLIMAAGLMVGTQKQGHGYWSRVAPAKLLLVRSFVLVAVYYLL 240
           GY  YVVP +F+LIL QTL++  G++   Q +  GYW +V+  +LL+ R      +Y  L
Sbjct: 181 GYTPYVVPGLFLLILHQTLLIGTGILGAGQWRKAGYWQQVSSLELLIGRIAAFGLIYAAL 240

Query: 241 SLYYFGASFDLHGVNTLAKPNDLISLLLPFLLACNFVGIALGAVTPRRELVTLVVLISSM 300
             +Y G  +  +GV+  A   D+ + ++PF LA    G+A   +  RR++ T V+L++SM
Sbjct: 241 GAFYMGWCYHWYGVSVQAGLGDIAAFIVPFYLATAAAGVAASCLFRRRDMPTQVMLLASM 300

Query: 301 PLIFTAGFIWPLEMIPAPLVWLAQCFPSTPAIQGFLGLNQMAASWSTIAPKWTLLWAQAL 360
           P++F +GF+WPL +IP PLV  AQ  P+ PAI G L LNQ+   +  +  +W  LW  AL
Sbjct: 301 PILFVSGFVWPLSLIPEPLVMAAQTIPAVPAIFGMLKLNQLGTGFDGVFSEWLTLWLLAL 360

Query: 361 VWGGLAFYLLRRVRQR 376
           V+  LA++ L  VRQR
Sbjct: 361 VYLALAWWGL-VVRQR 375