Pairwise Alignments

Query, 382 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 387 a.a., ABC transporter permease from Rahnella sp. WP5

 Score =  104 bits (260), Expect = 4e-27
 Identities = 87/352 (24%), Positives = 160/352 (45%), Gaps = 19/352 (5%)

Query: 2   TLFELFKAELKALFTNPVVVLTVFGGVVFYSFLYPLPYAKQIPREQTVSVVNLDQSQASF 61
           T ++ F   L  L   P+ ++ +    V       L YA +   +  V+V++ D S AS 
Sbjct: 9   TWWKTFGKVLTGLLDKPMWMMLLLSLCVM-----SLVYANRTVWDLPVAVIDQDHSTASR 63

Query: 62  QLERMVDATPQVKIVQRDHTIADAKQAFLDKKVAGILVIPEHFYKDLLLGKSPTLAYAGD 121
            L R +DA  ++  V  D+ +A+A+     +K+  ++++P    K +L G++  +   GD
Sbjct: 64  MLARQLDAGSKIATVAYDN-LAEAEHDLALRKLFAVIIMPVDLEKKILAGQNIVIPVYGD 122

Query: 122 ASYFLVYGTIVEGLAQAGGTLAAQTKVSRLVIEGEPMAFAAQHFSPTSANLKPTFNPRMG 181
           A+  L  G I + +  A  ++  Q     L+  G     A+   SP        FNP + 
Sbjct: 123 ATNRLANGQIQQDVLAAYQSILTQYNTDLLLSNGFSERQASVVLSPILGQSLDVFNPGIS 182

Query: 182 YVDYVVPAVFVLILQQTLIMAAGLMVGTQKQGHGYWSRVAPAKLLLVRSFV-----LVAV 236
           +   + P + V++LQ +L++A+  +      G        PA    + +F+     L+ V
Sbjct: 183 FAAIIFPGLLVMLLQHSLLIASVRVSIVLNSG--------PAGKPSIPAFLGGISALIPV 234

Query: 237 YYLLSLYYFGASFDLHGVNTLAKPNDLISLLLPFLLACNFVGIALGAVTPRRELVTLVVL 296
           +  LS+  F     + G    A   +++ L  PFLLA   +G  +       EL+ L + 
Sbjct: 235 WLFLSIVLFVLWPWVLGYRQTATIPEILLLTFPFLLAVLGLGKLVTECLRSVELIYLTLA 294

Query: 297 ISSMPLIFTAGFIWPLEMIPAPLVWLAQCFPSTPAIQGFLGLNQMAASWSTI 348
             + P+ + +G IWPL+ +PA +  ++   PST A +   G+NQM   +  +
Sbjct: 295 FLTTPVFYISGTIWPLQAMPAWVRAISSMLPSTWATKAIAGVNQMGLPFKDV 346