Pairwise Alignments

Query, 382 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 381 a.a., ABC-2 type transporter (RefSeq) from Shewanella loihica PV-4

 Score =  287 bits (735), Expect = 3e-82
 Identities = 155/381 (40%), Positives = 214/381 (56%), Gaps = 1/381 (0%)

Query: 1   MTLFELFKAELKALFTNPVVVLTVFGGVVFYSFLYPLPYAKQIPREQTVSVVNLDQSQAS 60
           M LF L   ELKA+ T+  + +T+FGGV+FYS LYPLPY  ++P  Q + VV+ D S  S
Sbjct: 1   MNLFALMFEELKAIVTDKAIAITLFGGVIFYSVLYPLPYLNEVPTRQQIVVVDGDHSSLS 60

Query: 61  FQLERMVDATPQVKIVQRDHTIADAKQAFLDKKVAGILVIPEHFYKDLLLGKSPTLAYAG 120
             + R   A+P++++V +   +  A+ A    +  G LVIPE F +DLL  +  TLAY G
Sbjct: 61  RLVIRHAQASPKLEVVAQVDDLTQAQAAVNSGQAHGYLVIPEGFRRDLLRQRGVTLAYGG 120

Query: 121 DASYFLVYGTIVEGLAQAGGTLAAQTKVSRLVIEGEPMAFAAQHFSPTSANLKPTFNPRM 180
           DA+YFLVY  I+EGL   G       +   L+  GE      +   P   N  P FNP +
Sbjct: 121 DANYFLVYSAILEGLVSVGIDAGKYIQFQGLLARGEAAKQVQRELEPIHLNSVPAFNPSL 180

Query: 181 GYVDYVVPAVFVLILQQTLIMAAGLMVGTQKQGHGYWSRVAPAKLLLVRSFVLVAVYYLL 240
           GY  YVVP V +L+L QTL++  G++   Q +  GYW  V   +LL  R      +Y L 
Sbjct: 181 GYTSYVVPGVLLLVLHQTLLIGTGILGAGQWRRQGYWHSVGLGQLLSARVATFGLIYSLF 240

Query: 241 SLYYFGASFDLHGVNTLAKPNDLISLLLPFLLACNFVGIALGAVTPRRELVTLVVLISSM 300
           + YY G     + V        +   LLPFLLA +  GIA  ++  RR+L T V+L+ SM
Sbjct: 241 TAYYIGYCHYWYQVGVQGNLGQVCLFLLPFLLATSLAGIAFSSLFVRRDLPTQVLLLISM 300

Query: 301 PLIFTAGFIWPLEMIPAPLVWLAQCFPSTPAIQGFLGLNQMAASWSTIAPKWTLLWAQAL 360
           P++F +GF+WP+E+IPAPL  ++Q  P    I+G L LNQM A W ++AP W  LW   L
Sbjct: 301 PILFVSGFVWPVELIPAPLQAVSQLIPGVVTIKGMLQLNQMGADWQSVAPLWWQLWGLVL 360

Query: 361 VWGGLAFYLLRRVRQRTAKPP 381
            +  LA YL  R+R  T K P
Sbjct: 361 FYLLLA-YLGLRLRLETRKSP 380