Pairwise Alignments

Query, 382 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 390 a.a., ABC-2 type transporter (RefSeq) from Shewanella loihica PV-4

 Score = 68.9 bits (167), Expect = 2e-16
 Identities = 80/385 (20%), Positives = 154/385 (40%), Gaps = 19/385 (4%)

Query: 5   ELFKAELKALFTNP-----VVVLTVFGGVVFYSFLYPLPYAKQIPREQTVSVVNLDQSQA 59
           +L   EL+ L+ +P     V  L + G +  +       ++  +PR   V+VV+ DQSQ 
Sbjct: 3   QLITRELRRLWQSPWQLALVSYLPLLGTLALWWL-----FSAGLPRALPVAVVDQDQSQL 57

Query: 60  SFQLERMVDATPQVKIVQRDHTIADAKQAFLDKKVAGILVIPEHFYKDLLLGKSPTLAYA 119
           S  L R + A   +  V     I  A+ A    +   ++V+P    +DL++G  P++   
Sbjct: 58  SRMLVRQLSANSVISPVSY-QDIGQAQAAMERAEAYAMVVLPFKLNQDLMIGHQPSIDIR 116

Query: 120 GDASYFLVYGTIVEG---LAQAGGTLAAQTKVSRLVIEGEPMAFAAQHFSPTSANLKPTF 176
            +A + LV G ++     L+ A G L  + ++ +L   G P   A  + +         +
Sbjct: 117 YNAQFLLV-GKLLSSQIQLSLADG-LKQKARLKQLA-SGVPPVQAEINLNLIKTQSSALY 173

Query: 177 NPRMGYVDYVVPAVFVLILQ--QTLIMAAGLMVGTQKQGHGYWSRVAPAKLLLVRSFVLV 234
           N    YV ++VP + + ++Q    L+ A  L    +++    W  +   ++LL +  V  
Sbjct: 174 NANNNYVAFLVPPILIALVQIVAMLVFANALTEELRRETLAEWFSLGTYRVLLSKVLVYT 233

Query: 235 AVYYLLSLYYFGASFDLHGVNTLAKPNDLISLLLPFLLACNFVGIALGAVTPRRELVTLV 294
            +  L     +   +   G+        L+   L  LLA   + + + A+      V   
Sbjct: 234 PLLMLQLGLVYAWLYGYLGLPMRGGLGQLLIAQLVMLLAVWLIVLTIFALLQDSARVISF 293

Query: 295 VLISSMPLIFTAGFIWPLEMIPAPLVWLAQCFPSTPAIQGFLGLNQMAASWSTIAPKWTL 354
                 P     G  +P   +P    W  Q  PS+  +   +G+         +  + + 
Sbjct: 294 CTALFAPSFAFMGVTFPTHEMPLLAQWWRQIMPSSHYVNTHIGVIAYGQETQALVSQLSS 353

Query: 355 LWAQALVWGGLAFYLLRRVRQRTAK 379
            W   L+   +A  L +  R++T +
Sbjct: 354 YWGFLLLLPVIALMLAKMRREQTGE 378