Pairwise Alignments

Query, 382 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 377 a.a., ABC-type multidrug transport system, permease component from Dechlorosoma suillum PS

 Score = 54.7 bits (130), Expect = 4e-12
 Identities = 66/291 (22%), Positives = 122/291 (41%), Gaps = 34/291 (11%)

Query: 88  AFLDK-KVAGILVIPEHFYKDLLLGKSPTLAYAGDASYFLVYGTIVEGLAQAGGTLAAQT 146
           A LD+ +V  ++  P  F++DL+ GK+PTL    DA+  +           AGG ++   
Sbjct: 95  ALLDRSQVQFVVTFPPGFHRDLVRGKAPTLLVEADATDPMA----------AGGAISVLN 144

Query: 147 KVSRLVIEGEPMAFAAQHFSPTSANLKPTFNPRMGYVDY-VVPAVFVLILQQTLIMAAGL 205
           K+   V   +          P    +   +NP  G   Y VVP +  +IL  T+++  GL
Sbjct: 145 KLGLEVFAPDLPGLEKTATPPLDLRVHRRYNPE-GLTSYNVVPGLLGVILTMTMVLMTGL 203

Query: 206 MVGTQKQGHGYWSRVA-PA--------KLLLVRSFVLVAVYYLLSLYYFGASFDLHGVNT 256
            +  +++   + + +A PA        K++      L+ V  +L    F     +HG   
Sbjct: 204 AMTRERERGTFENLLATPATPVEVMTGKIVPYILIGLIQVTLILLAARFIFDVPMHGNLL 263

Query: 257 LAKPNDLISLLLPFLLACNFVGIALGAVTPRRELVTLVVLISSMPLIFTAGFIWPLEMIP 316
           L     L +++L F+ A   +GI   ++   +     +     +P +  +GF++P   +P
Sbjct: 264 L-----LYAVVLLFICANLTLGITFSSIARNQLQAMQMTFFFFLPSMLLSGFMFPFRGMP 318

Query: 317 APLVWLAQCFPSTPAIQGFLGL----NQMAASWSTIAPKWTLLWAQALVWG 363
                +    P T  +    G+    N +   WS++   W +L   A+V G
Sbjct: 319 EWAQVVGNVLPLTHFLVLVRGILLKGNGIDMVWSSV---WPILAFIAVVLG 366