Pairwise Alignments

Query, 382 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 435 a.a., conserved hypothetical protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 88.6 bits (218), Expect = 3e-22
 Identities = 85/372 (22%), Positives = 159/372 (42%), Gaps = 29/372 (7%)

Query: 3   LFELFKAELKALFTNP----VVVLTVFGGVVFYSFLYPLPYAKQIPREQTVSVVNLDQSQ 58
           L  L + EL+AL+ +P    ++      G++   +L+    +  +PR+  V++V+LD SQ
Sbjct: 35  LMALVRRELRALWRDPWQLALISYIPLLGILCLWWLF----SAGLPRQLPVAIVDLDHSQ 90

Query: 59  ASFQLERMVDATPQVKIVQRDHTIADAKQAFLDKKVAGILVIPEHFYKDLLLGKSPTLAY 118
            S  L R + A P V   Q    ++ A  A    +V  ++V P    KDLL G +PT+  
Sbjct: 91  LSRMLTRQLKANP-VTDPQSFTDLSSAITAMQQAQVYAVVVFPYDMKKDLLTGHTPTIDV 149

Query: 119 AGDASYFLVYGTIVEGLAQAGGTLAAQTKVSRLVIEGEPMAFAAQHFSPTSANLKPTFNP 178
             ++ + LV   +   +  + G    Q    + ++ G P +  A + SP  +     FN 
Sbjct: 150 RYNSQFLLVGKLLSSQIQMSLGDGLLQVAGLKQLMTGTPKSQVAVNLSPVKSQTTALFNR 209

Query: 179 RMGYVDYVVPAVFVLI------------LQQTLIMAAGLMVG--TQKQGHGYWSRVAPAK 224
              Y+ ++VP V V +            L + L + A   VG  + +    +W +V  AK
Sbjct: 210 NNNYIGFLVPPVLVALWQLLSMLVIANSLNRELHLNAAQSVGGISNRLTEHFWPKVL-AK 268

Query: 225 LLLVRSFVLVAVYYLLSLYYFGASFDLHGVNTLAKPNDLISLLLPFLLACNFVGIALGAV 284
           +LL    +++   ++L+  Y   +  L G   L     L + L+  L   + V +    +
Sbjct: 269 ILLFTPILMLQGGFILTWLYQYLALPLAGSLALL----LFAQLIMLLAVWSLVLLVFVLM 324

Query: 285 TPRRELVTLVVLISSMPLIFTAGFIWPLEMIPAPLVWLAQCFPSTPAIQGFLGLNQMAAS 344
                +++    + + P     G  +P   +P    W     PS+  I+  + +    A+
Sbjct: 325 RDSARVISFCTALFA-PAFAFMGITFPTHEMPQLAQWWRLVMPSSHYIESHVSVVSYGAA 383

Query: 345 WSTIAPKWTLLW 356
           W T+A + +  W
Sbjct: 384 WPTVAQQLSSYW 395