Pairwise Alignments

Query, 382 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 378 a.a., conserved hypothetical protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  311 bits (797), Expect = 2e-89
 Identities = 158/372 (42%), Positives = 231/372 (62%)

Query: 1   MTLFELFKAELKALFTNPVVVLTVFGGVVFYSFLYPLPYAKQIPREQTVSVVNLDQSQAS 60
           M L++L   ELKA+ ++  + +T+FGGV+FYS LYPLPY  Q+P EQ + VV+LD S  S
Sbjct: 1   MNLWQLVLTELKAIVSDKAIAVTLFGGVLFYSVLYPLPYLHQVPTEQQLIVVDLDHSSLS 60

Query: 61  FQLERMVDATPQVKIVQRDHTIADAKQAFLDKKVAGILVIPEHFYKDLLLGKSPTLAYAG 120
            QL R  DA+ +++++ +  +I +AK+     K  G+LVIPE F +DLLLGK  TL+Y G
Sbjct: 61  RQLIRHADASAKIQVIGQVGSITEAKRFIETGKAHGLLVIPEGFRRDLLLGKGVTLSYGG 120

Query: 121 DASYFLVYGTIVEGLAQAGGTLAAQTKVSRLVIEGEPMAFAAQHFSPTSANLKPTFNPRM 180
           DASYFL+Y  + EGL  AG     Q +   ++ +G+    A Q+ +    N  P FNP +
Sbjct: 121 DASYFLIYSAVAEGLVSAGMDAGKQIQWIGMLAQGKNPKEAEQNLNSLHLNSMPAFNPSL 180

Query: 181 GYVDYVVPAVFVLILQQTLIMAAGLMVGTQKQGHGYWSRVAPAKLLLVRSFVLVAVYYLL 240
           GY  YVVP +F+LIL QTL++  G++   Q +  GYW +V+P +L+  R    + +Y L 
Sbjct: 181 GYTPYVVPGLFLLILHQTLLIGTGILGAGQWRHQGYWQQVSPLQLVCGRILAFMLIYLLF 240

Query: 241 SLYYFGASFDLHGVNTLAKPNDLISLLLPFLLACNFVGIALGAVTPRRELVTLVVLISSM 300
           + +Y G  +  + V+  A    +   LLPFLLA    G+A+  +  RR+L T V+L+ SM
Sbjct: 241 TSFYVGYCYHWYNVSIQANFGLVALWLLPFLLATAAAGVAMSTLFTRRDLPTQVLLLISM 300

Query: 301 PLIFTAGFIWPLEMIPAPLVWLAQCFPSTPAIQGFLGLNQMAASWSTIAPKWTLLWAQAL 360
           P++F +GF+WP+ +IP PLV  +Q  P+ PAI G L LNQM ASW+++ PKW  LW    
Sbjct: 301 PILFVSGFVWPIALIPEPLVLGSQMIPAVPAIMGMLELNQMGASWASVLPKWLQLWVLFA 360

Query: 361 VWGGLAFYLLRR 372
           V+ GLA   + R
Sbjct: 361 VFFGLALLGIHR 372