Pairwise Alignments

Query, 382 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 373 a.a., ABC transporter, permease protein, putative (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 65.1 bits (157), Expect = 3e-15
 Identities = 73/316 (23%), Positives = 133/316 (42%), Gaps = 22/316 (6%)

Query: 18  PVVVLTVFGGVVFYSFLYPLPYAKQIPREQTVSVVNLDQSQASFQLERMVDATPQVKIVQ 77
           P+V L +FG  +          A+ +P      +VNL  S  S  L + V+AT  V   +
Sbjct: 30  PLVQLMLFGYAINTD-------ARHLP----AGLVNLSDSSYSRALVKAVEATQVVDFKR 78

Query: 78  RDHTIADAKQAFLDKKVAGILVIPEHFYKDLLLGKSPTLAYAGDASYFLVYGTIVEGLAQ 137
              + A A+ A    +V  +L +      D  L + P  A+AG A +    G   + L  
Sbjct: 79  SYSSAAQAEAAITRGEVKAVLYLGADL--DERLVRHP--AFAGQAYFAEPVG---QWLVD 131

Query: 138 AGGTLAAQTKVSRLVIEGEPMAFAAQHFSPTSANLKPTFNPRMGYVDYVVPAVFVLILQQ 197
              T+ A T  S   +  + +       +P S  +   FNP    V  +VP +  +IL  
Sbjct: 132 GSDTVVASTIRSLRQMPLDEITGRTLKSNPPSFEVVQYFNPEQRSVVNIVPGLLGVILTM 191

Query: 198 TLIM-AAGLMVGTQKQGHGYW---SRVAPAKLLLVRSFVLVAVYYLLSLYYFGASFDLHG 253
           T++M  +  +V  ++QG+  +   + V P +L+L +    V V ++       A   L  
Sbjct: 192 TMVMFTSAAIVREREQGNMEFLITTPVRPLELMLGKITPYVLVGFVQVTIILSAGHLLFD 251

Query: 254 VNTLAKPNDLISLLLPFLLACNFVGIALGAVTPRRELVTLVVLISSMPLIFTAGFIWPLE 313
           V      + +    + F+ A   +G+ +  +   +     + +   +P I  +GF++P E
Sbjct: 252 VPIRGGIDSIAFAAMLFICASLTLGLVISTIAKTQLQSMQMTVFILLPSILLSGFMFPYE 311

Query: 314 MIPAPLVWLAQCFPST 329
            +P    W+A+  P+T
Sbjct: 312 AMPVAAQWIAEALPAT 327