Pairwise Alignments

Query, 382 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 371 a.a., ABC-type multidrug transport system, permease component from Sphingomonas koreensis DSMZ 15582

 Score = 63.9 bits (154), Expect = 7e-15
 Identities = 87/390 (22%), Positives = 164/390 (42%), Gaps = 52/390 (13%)

Query: 6   LFKAELKALFTNPVVVLTVFGGVVFYSFLYPLPYAKQIPREQTVSVVNLDQSQASFQLER 65
           L   EL+AL  +P  V  +   V+    L+P      + R+ ++ ++N D  +AS ++ +
Sbjct: 8   LIVKELQALTRDPAAVRLLIMPVILQVILFPFAATLDV-RDASIGILNQDGGKASTEIVQ 66

Query: 66  MV---DATPQVKIVQRDHTIADAKQAFLDKKVAGILVIPEHFYKDLLLGKSPTLAYAGDA 122
            +   +A  +V+I+  D  + DA      + +  +  +P  F +DL  G + ++   GD 
Sbjct: 67  RIAAAEAFGEVRILTSDDELRDALNR--QQVLLAVRFLPS-FSRDLARGDAASVQVIGDG 123

Query: 123 SYFLVYGTIVEGLAQAGGTLAAQTKVSRLV------IEGEPMAFAAQHFSPTSANLKPTF 176
                         ++     AQ  V ++V      I G+P +  +  F       +  +
Sbjct: 124 R-------------RSNSAQLAQGYVDQIVRGYGAEISGDPRSRGS--FGSAEVVTRNWY 168

Query: 177 NPRM-GYVDYVVPAVFVLILQQTLIMAAGLMVGTQKQG---HGYWSRVAPAKLLLVRSFV 232
           NP + G    V   V ++     LI  A  +   ++QG       S ++PA ++L ++  
Sbjct: 169 NPNLEGRWSIVTSLVAIMTTLGVLITTALSVAREREQGTLDQILVSPLSPALIMLGKTIP 228

Query: 233 LV-------AVYYLLSLYYFGASFDLHGVNTLAKPNDLISLLLPFLLACNFVGIALGAVT 285
            V        +  L++++ FG  F      T +       +LL  L  C F G+ + A++
Sbjct: 229 AVMIGTFQATIIVLVAIFIFGVPF------TGSLLVLYTGMLLYALALCGF-GLFISAIS 281

Query: 286 PRRELVTLVVLISSMPLIFTAGFIWPLEMIPAPLVWLAQCFPSTPAIQGFLGLNQMAASW 345
             ++   L V    MP I  +GFI P+  +P  L W++   P    I    G+    + +
Sbjct: 282 ETQQQAFLGVFTFMMPAILLSGFIAPVANMPLWLQWVSWIDPLRHFIVIVKGVFLKGSGF 341

Query: 346 STIAPKWTLLWAQALV---WGGLAFYLLRR 372
             I   W+ LW  A++     G A+++ RR
Sbjct: 342 VEI---WSSLWPIAVIAVGTLGTAYFIFRR 368