Pairwise Alignments

Query, 382 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 393 a.a., conserved hypothetical protein (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score = 70.9 bits (172), Expect = 6e-17
 Identities = 79/397 (19%), Positives = 157/397 (39%), Gaps = 43/397 (10%)

Query: 1   MTLFELFKAELKALFTNPVVVLTVFGGVVFYSFLYPLPYAKQIPREQTVSVVNLDQSQAS 60
           + L+++ + E + L + P+ +  +    +F    +       +P+     VV++D S  S
Sbjct: 9   VALWQVMQRECRRLVSRPLYLFCMVIAPLFCYLFFTTLMDSGLPQNLPAGVVDMDDSSTS 68

Query: 61  FQLERMVDATPQVKIVQRDHTIADAKQAFLDKKVAGILVIPEHFYKDLLLGKSPTLAYAG 120
             + R +DA  Q  +V     + DA+ A  + K+ G   IP+    +    + P +++  
Sbjct: 69  RNIVRNLDAFSQTGVVAHYSNVTDARIAVQEGKIYGFFYIPKGLSAEAQSQRQPKISFYT 128

Query: 121 DASYFLVYGTIVEGLAQAGGTLAAQTKVSRLVIEGEPMAFAAQHFSPTSANLKPTFNPRM 180
           + SY +    +   +   G   A     S L  +G     A     P   +  P  NP +
Sbjct: 129 NYSYLIAGSLLFRDMKMMGELTAGSAARSVLYAKGATEDQAMGFLQPIVIDTHPLNNPWL 188

Query: 181 GYVDY----VVPAVFVLILQQTLIMAAGLMVGTQKQGHGYWSRVAPAKLLLVRS------ 230
            Y  Y    ++P V +L++    + + G+ +  +      W R++   + +  +      
Sbjct: 189 NYSVYLCNTLIPGVLMLLIFMVTVYSIGVEIKDRTARE--WLRMSNNSIYIALAGKLLPH 246

Query: 231 ---FVLVAVYYLLSLYYFGASFDLH-GVNTLAKPNDLISLLLPFLLACNFVGIALGAVTP 286
              F ++ ++Y + LY F     LH   N+   P  +I   L  +LA    GI +    P
Sbjct: 247 TVVFFIMGIFYNVYLYGF-----LHFPCNSGIFP--MIFATLCLVLASQCCGIVMIGTLP 299

Query: 287 RRELVTLVVLISSMPLIFTAGFIWPLEMIPAPLVWLAQCFP--------STPAIQGFLGL 338
              L      +  +     +GF +P+  +   L  L+  FP           A+ G+   
Sbjct: 300 TLRLGLSFASLWGVISFSISGFSFPVMAMNPVLQALSNLFPLRHYFLIYVDQALNGY--- 356

Query: 339 NQMAASWSTIAPKWTLLWAQALVWGGLAFYLLRRVRQ 375
             MA SWS         +   L++  L F+++ R+++
Sbjct: 357 -SMAYSWSN--------YMALLIFMMLPFFVVHRLKE 384