Pairwise Alignments

Query, 382 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 419 a.a., conserved hypothetical protein (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  162 bits (409), Expect = 2e-44
 Identities = 108/380 (28%), Positives = 180/380 (47%), Gaps = 35/380 (9%)

Query: 3   LFELFKAELKALFTNPVVVLTVFGGVVFYSFLYPLPYAKQIPREQTVSVVNLDQSQASFQ 62
           LF ++K E +  F +  V++      + Y  LY   Y  ++ RE    VV+   S  S +
Sbjct: 17  LFYIWKREFQTTFRDQGVLIFFILVPLGYPLLYSFIYDNEVVREVPAVVVDDSHSSLSRE 76

Query: 63  LERMVDATPQVKIVQRDHTIADAKQAFLDKKVAGILVIPEHFYKDLLLGKSPTLAYAGDA 122
             R VDATP ++IV     + +AKQ   ++   GI+ IP  F  ++  GK   ++   D 
Sbjct: 77  YLRKVDATPDIQIVAYCADMEEAKQMLKNRLAYGIIYIPSDFSDNIAKGKQTQVSIYCDM 136

Query: 123 SYFLVYGTIVEG-------------LAQAGGTLAAQTKVSRLVIEGEPMAFAAQHFSPTS 169
           S  L Y +++               +A++G T   Q +++   IE E ++          
Sbjct: 137 SGLLYYKSMLIANTAVSLDMNKDIKIARSGNTTERQDEITGYPIEYEEISI--------- 187

Query: 170 ANLKPTFNPRMGYVDYVVPAVFVLILQQTLIMAAGLMVGTQKQGHGYWSRV-------AP 222
                 FNP  G+  +++PAV VLI+QQTL++  GL  GT ++ + +   V         
Sbjct: 188 ------FNPTAGFAAFLIPAVLVLIIQQTLLLGIGLAAGTARENNRFKDLVPINRHYNGT 241

Query: 223 AKLLLVRSFVLVAVYYLLSLYYFGASFDLHGVNTLAKPNDLISLLLPFLLACNFVGIALG 282
            +++L +      VY L+S Y       L  +N + +P  L+  + P+L AC F  +   
Sbjct: 242 LRIVLGKGLSYFLVYVLVSFYVLHIVPRLFSLNQIGQPGSLVLFVAPYLAACIFFAMTTS 301

Query: 283 AVTPRRELVTLVVLISSMPLIFTAGFIWPLEMIPAPLVWLAQCFPSTPAIQGFLGLNQMA 342
                RE   L+ + +S+PL+F +G  WP   IP    +++  FPST  I GF+ +N M 
Sbjct: 302 IAIRNRETCMLIFVFTSVPLLFISGISWPGAAIPPFWKYVSYIFPSTFGINGFVKINNMG 361

Query: 343 ASWSTIAPKWTLLWAQALVW 362
           A+ S +A ++  LW QA V+
Sbjct: 362 ATLSEVAFEYKALWIQAGVY 381