Pairwise Alignments

Query, 382 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 389 a.a., conserved hypothetical protein (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  145 bits (367), Expect = 1e-39
 Identities = 96/374 (25%), Positives = 174/374 (46%), Gaps = 7/374 (1%)

Query: 6   LFKAELKALFTNPVVVLTVFGGVVFYSFLYPLPYAKQIPREQTVSVVNLDQSQASFQLER 65
           + + E  A+ T+  V+L + GG+  Y  LY   YA  I  +  V+VV+   S+ S    R
Sbjct: 13  IIRREYLAISTSYAVLLVLMGGIFVYGLLYNYMYAPNIVTDVPVAVVDNSHSELSRNFIR 72

Query: 66  MVDATPQVKIVQRDHTIADAKQAFLDKKVAGILVIPEHFYKDLLLGKSPTLAYAGDASYF 125
            +DATPQ +I  +     +AK+     KV GIL +P  F + +  G     +       F
Sbjct: 73  WLDATPQAEIYDQAMDYHEAKEWMKAGKVQGILYLPHDFEERVFRGDEAVFSLYATTDAF 132

Query: 126 LVYGTIVEGLAQAGGTLAAQTKVSRLVIEGEPMAFAAQHFSPTSANLKPTFNPRMGYVDY 185
           L +  +    ++    +  + +    V        A     P +      +N   GY  Y
Sbjct: 133 LYFEALQGASSRVMLAINDKYRPDGAVFLPPQGLLAVAMAQPVNIAGTALYNYTEGYGSY 192

Query: 186 VVPAVFVLILQQTLIMAAGLMVGTQKQGHGYW-------SRVAPAKLLLVRSFVLVAVYY 238
           ++PAV V+I+ QTL+M  G++ G +    G         S     +++  ++FV  ++Y 
Sbjct: 193 LIPAVMVIIIFQTLLMVIGMVTGEEHMTKGILAYTPFGKSWAVAIRIVSGKTFVYCSLYA 252

Query: 239 LLSLYYFGASFDLHGVNTLAKPNDLISLLLPFLLACNFVGIALGAVTPRRELVTLVVLIS 298
           + S +  G       +  +     ++ +++P+LLA +F+G+A        E   L++   
Sbjct: 253 VFSFFLLGLLPHFFSIPNIGNGLYIVLMMIPYLLATSFLGLAASRYFTDSEAPLLMIAFF 312

Query: 299 SMPLIFTAGFIWPLEMIPAPLVWLAQCFPSTPAIQGFLGLNQMAASWSTIAPKWTLLWAQ 358
           S+ LIF +G  +P+E++P         FP+ PA   F+ LN M AS + I P++  LW Q
Sbjct: 313 SVGLIFLSGVSYPMELMPWYWKAAHYIFPAAPATLAFVKLNSMGASMADIRPEYITLWIQ 372

Query: 359 ALVWGGLAFYLLRR 372
           A+++  L+ ++ ++
Sbjct: 373 AVIYFILSAWVYKK 386