Pairwise Alignments

Query, 382 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 394 a.a., conserved hypothetical protein, putative transmembrane protein (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score = 60.1 bits (144), Expect = 1e-13
 Identities = 60/289 (20%), Positives = 122/289 (42%), Gaps = 29/289 (10%)

Query: 49  VSVVNLDQSQASFQLERMVDATPQVKIVQRDHTIADAKQAFLDKKVAGILVIPEHFYKDL 108
           + +V+ D + +S  + R + A P  K+ +       A++A   K++ G L IP  F +D 
Sbjct: 56  IGIVDQDNTASSRAITRNISAVPTFKVTRHFVNEEAARKAVQKKEIYGYLSIPPKFEQDA 115

Query: 109 LLGKSPTLAYAGDASYFLVYGTIVEGLAQAGGTLAAQTKVSRLVIEGEPMAFAAQHFSPT 168
           + GK+ TL+Y    +   V G ++     +   ++    V + V  G           P 
Sbjct: 116 ISGKNATLSYYYHYALLSVGGELMAAFETSLAPVSLSPIVMQAVALGVEQDKITTFLLPV 175

Query: 169 SANLKPTFNPRMGYVDYVVPAVFVLILQQTLIMAAGLMVGTQKQGH--GYWSRVAPAKL- 225
            A+  P +NP + Y  Y+    F ++ Q  +++     VG + +      W  VA   + 
Sbjct: 176 QASNHPIYNPSLDYSVYLSQPFFFVLFQVLILLITVYAVGIEIKFRTADEWLFVAKGNMV 235

Query: 226 ------LLVRSFVLVAVYYLLSLYYFGASFDLHGVNTLAKPNDLISLLLPFLLACNFVGI 279
                 LL  + + + + +L +   FG    +    +    N L +L   F++A   +G+
Sbjct: 236 TAVLGKLLPYTIIFILIGWLANYVMFGI-LHIPFQGSWLLMNMLTAL---FVVATQALGL 291

Query: 280 ALGAVTPRREL-VTLVVLISSM---------------PLIFTAGFIWPL 312
            L ++ P   L +++V ++ S+               PL+  A +++P+
Sbjct: 292 FLFSLFPAISLIISIVSMVGSLGATLSGVTFPVPNMYPLVRDASYLFPV 340